Plant FIBer expression Database

Lus10015353 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28700 686 / 0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007271
[exp]
868 / 0 AT3G28700 694 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G077000
[exp]
700 / 0 AT3G28700 730 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Lus10015353 pacid=23160855 polypeptide=Lus10015353 locus=Lus10015353.g ID=Lus10015353.BGIv1.0 annot-version=v1.0
ATGCTGCTGAGGAAACTGCTATTGCGGCGATCCGGGCACCTCTTCATCAATAATTCTACACCGGAATCATCAGTTTCTTCGCTCATCAGATGTATGCGAT
TATCTTCCTCTTCCCAACCGCAAGGCCCAGACGATGGTTTTGTCGGCCGCCAGGACAACGGCGAACAGCATCCGGCTGCCACCATTTCCGTCGACCGCTC
AGGACTCTATCATCCACCTGAGCATTCTCATGAACCCAGGTCGGAGAGTGAACTGGTGAAGCACCTTAAAGGGATTATCAAGTTTAGAGGAGGCCCAATC
TCAGTGGCAGAGTACATGGAAGAAGTTTTGACGAACCCCAAGTTTGGCTTCTATATCAACCGAGATGTTTTTGGAACAGATGGTGATTTCATAACCTCTC
CTGAGGTCAGCCAGATGTTTGGGGAGATGATTGGTGTCTGGGTTATGTGTTTGTGGGAACAAATGGGACAACCAACAAAGGTCAATTTAGTTGAACTGGG
GCCGGGTCGAGGTACTCTCATGGTTGATCTATTGCGGGGTGCAGCAAAGTTCAAGAACTTTACAGCCTCGCTGCATATTCACTTGGTAGAATGCAGTCCT
GTTCTGCAGAAGATACAGCATCAGAATCTAAAATGCGAGGATGAGGATGATGCAGGTGAAACAGGTGAAAGAAAAACAGTTAGTGCAATTACAGGAAGTC
CTGTGACATGGTACTCTTCACTGGAGCAGGTTCCATCTGGATCTCCTACAATCATCCTCGCTCATGAGTTCTATGATGCTTTACCTGTCCACCAGTTTCA
GTATCCAAGGATTAGTCTCCTAAACAGAGTCACCAAAGGTTACGGTTACTCATATTTCTATCTTGTTCGTCAATCTGATGATGATGCTCTACAGAAGTCT
TCTCGTGGTTGGTCAGAAAAAATGGTTGACGTAGGAGACGATTCAAAGTTGCGGTTTGTTCTGTCCCCCCAGCCAACGCCAGCCACTCTGTACTTGATGA
AGCGATGCAAGTGGGCCAGTGCTAAAGAAGTAGAAAATCTTAATCAGATTGAGATTTGCCCCAAAGCAATTGACTTGACTCATTCAATTGCACAGAGAAT
AAGTTCTGATGGAGGTGCAGCCTTGATAATCGACTATGGCCTCAATGGAGTGGTCTCGGATAGTTTGCAGGCGATCAGGAAACACAAGTTCGTCAACATA
CTGGATGATCCTGGGTCTGCTGACCTCAGTGCATATGTCGATTTTGCTTCAATCAAGCACACAGCGGAGGAAGCTTCAGAAAATGTAGCGGCGCATGGGC
CACTGACGCAGTCTCAGTTTCTAGGACTACTGGGGATAAACTTCCGAGTAGAAGCATTGCTAGAGAGTTGCACGGATGAACAAGCAGAGTCGTTAAGAAC
AGGATACTGGCGACTGGTAGGGGAAGGGGAAGCCCCTTTCTGGGAAGGACCCGAGGAATTAACACCCATTGGGATGGGAACCAGGTACTTGGCAATGGCA
ATAGTCAACAAGAAACAAGGCATTCCTGCTCCTTTCCAGTAA
AA sequence
>Lus10015353 pacid=23160855 polypeptide=Lus10015353 locus=Lus10015353.g ID=Lus10015353.BGIv1.0 annot-version=v1.0
MLLRKLLLRRSGHLFINNSTPESSVSSLIRCMRLSSSSQPQGPDDGFVGRQDNGEQHPAATISVDRSGLYHPPEHSHEPRSESELVKHLKGIIKFRGGPI
SVAEYMEEVLTNPKFGFYINRDVFGTDGDFITSPEVSQMFGEMIGVWVMCLWEQMGQPTKVNLVELGPGRGTLMVDLLRGAAKFKNFTASLHIHLVECSP
VLQKIQHQNLKCEDEDDAGETGERKTVSAITGSPVTWYSSLEQVPSGSPTIILAHEFYDALPVHQFQYPRISLLNRVTKGYGYSYFYLVRQSDDDALQKS
SRGWSEKMVDVGDDSKLRFVLSPQPTPATLYLMKRCKWASAKEVENLNQIEICPKAIDLTHSIAQRISSDGGAALIIDYGLNGVVSDSLQAIRKHKFVNI
LDDPGSADLSAYVDFASIKHTAEEASENVAAHGPLTQSQFLGLLGINFRVEALLESCTDEQAESLRTGYWRLVGEGEAPFWEGPEELTPIGMGTRYLAMA
IVNKKQGIPAPFQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G28700 Protein of unknown function (D... Lus10015353
[exp]
0 1
AT5G20520 WAV2 WAVY GROWTH 2, alpha/beta-Hydr... Lus10011949
[exp]
3.3 0.7850
AT5G16420 Pentatricopeptide repeat (PPR-... Lus10030222
[exp]
18.7 0.7980
AT2G32910 DCD (Development and Cell Deat... Lus10001728
[exp]
24.3 0.7955
AT1G02140 MAGO, HAP1, MEE... MATERNAL EFFECT EMBRYO ARREST ... Lus10029791
[exp]
25.4 0.7962
AT2G44020 Mitochondrial transcription te... Lus10004614
[exp]
33.8 0.7813
AT5G06110 DnaJ domain ;Myb-like DNA-bind... Lus10026919
[exp]
34.5 0.7938
AT1G17370 UBP1B oligouridylate binding protein... Lus10008130
[exp]
47.0 0.7785
AT1G17370 UBP1B oligouridylate binding protein... Lus10013167
[exp]
57.7 0.7706
AT3G43590 zinc knuckle (CCHC-type) famil... Lus10013378
[exp]
67.7 0.7749
AT5G14610 DEAD box RNA helicase family p... Lus10032135
[exp]
70.3 0.7708

Lus10015353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.