Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04680 674 / 0 CLPS3 CLP-similar protein 3 (.1.2) AT5G39930 446 / 2e-155 CLPS5 CLP1-similar protein 5 (.1) AT5G11010 76 / 4e-15 Pre-mRNA cleavage complex II protein family (.1.2.3) AT5G39920 45 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007269 [exp] 749 / 0 AT3G04680 571 / 0.0 CLP-similar protein 3 (.1.2) Lus10014756 [exp] 79 / 3e-15 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033124 [exp] 73 / 9e-14 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10036655 [exp] 72 / 2e-13 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077200 [exp] 776 / 0 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2) Potri.012G073500 [exp] 71 / 3e-13 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1 CL0023 [flax] [poplar] P-loop_NTPase PF03205 [flax] [poplar] MobB Molybdopterin guanine dinucleotide synthesis protein B
Representative CDS sequence Show only first row Show all	>Lus10015355 pacid=23160893 polypeptide=Lus10015355 locus=Lus10015355.g ID=Lus10015355.BGIv1.0 annot-version=v1.0 ATGGCATACGGTGGTGCAGTCTCGGCAATGAACACTGGTGCAGCCGCGCCGCCGGCAGTAAGGCAAGTGAAATTGGAAAAGGAAAGTGAACTTAGAATTG AAGCGGCAAACGAAACGCCACTTCAGTTAAGGCTCCTAAACGGGACAGCTGAAATATTTGGCACTGAGCTTCCACCTGAAATTTGGCTCACATTCCCTCC TCGCTTAAAATTCGCTGTGTTTACTTGGTATGGAGCTACACTTGAGCTGGATGGCGCCACAGAAACCGACTATACAGCTGATGAGACACCTATGGTTAGT TATGTCAATGTGCATGCTATACTAGATGGGCGAAGGAACCAAGCTAAAGCTTCGTTTTCTGGGGACTCAGAACCCGTTCAGGGTCCTAGGGTGATTGTTG TTGGACCTACTGATTCTGGAAAGAGCACCTTATCGAGGATGCTGGTCAGTTGGGCAGCTAAACAGGGTTGGAAACCAACATATGTTGACCTTGATATTGG TCAAGGGGCAATAACGATTCCTGGATGCATTGCTGCTACCCCCATAGAGTTGCCTATTGATCCAGCTGAAGGCATTCCCTTGGACATGCCACTAGTTTAT TTTTATGGCCACACGAGTCCTAGTCAAAATGTGGAGTTATATAAAACTCTTGTTAAAGAGCTAGCTGAAATACTGGAGAAACAATTTACTGGTAATGCTG AATCTCGTGCTGCAGGCATGGTGATCAACACAATGGGGTGGATAGAAGGTGTAGGCTATGAGCTGCTGCTTCATGCAATTGATACGTTCAGTGCAAATGT TGTCTTGGTATTAGGACAGGAAAAACTTTTCAGCATGCTCAGGGATGTACTGAGGAGTAAGCCCAATGTGGATGTAGTCAAACTTCAAAAGTCAGGTGGT GTAGTATCCAGGAGTCCAAAACTCCGTCAGAAGTCGAGAAGTTACAAGATTAGGGAATACTTCTATGGAATTTCAAATGATCTATCCCCACATTCAAATA TTGCAAACTTCAACGATCTGTTTGTATATCGAATTGGTGGTGGACCACAAGCCCCAAGATCTGCTCTCCCAATAGGCGCAGACCCTGTTTCCAACCCGCT GAGAGTCACGCCTGTGAATATCGACCTTGATCTCCTCCACGTAATCCTTGCTGTTTCGTATGCACAAGAACCAGATCAGATTGCGTCGAGTAACGTTGCT GGGTTTATCTATGTCACTGCCATTGATCAGCAGAGGAGAACGCTGACATACTTATCACCAGCGGCGGGGGAACTTCCGAGCAAGTATTTGGTGATGGGAA CCTTAACTTGGCTCGAAACATAA
AA sequence Show only first row Show all	>Lus10015355 pacid=23160893 polypeptide=Lus10015355 locus=Lus10015355.g ID=Lus10015355.BGIv1.0 annot-version=v1.0 MAYGGAVSAMNTGAAAPPAVRQVKLEKESELRIEAANETPLQLRLLNGTAEIFGTELPPEIWLTFPPRLKFAVFTWYGATLELDGATETDYTADETPMVS YVNVHAILDGRRNQAKASFSGDSEPVQGPRVIVVGPTDSGKSTLSRMLVSWAAKQGWKPTYVDLDIGQGAITIPGCIAATPIELPIDPAEGIPLDMPLVY FYGHTSPSQNVELYKTLVKELAEILEKQFTGNAESRAAGMVINTMGWIEGVGYELLLHAIDTFSANVVLVLGQEKLFSMLRDVLRSKPNVDVVKLQKSGG VVSRSPKLRQKSRSYKIREYFYGISNDLSPHSNIANFNDLFVYRIGGGPQAPRSALPIGADPVSNPLRVTPVNIDLDLLHVILAVSYAQEPDQIASSNVA GFIYVTAIDQQRRTLTYLSPAAGELPSKYLVMGTLTWLET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10015355 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	2.2	0.8661
AT1G24310			unknown protein		Lus10037010 [exp]	8.1	0.7996
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	19.8	0.8585
AT4G34412			unknown protein		Lus10014052 [exp]	21.7	0.8397
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	24.9	0.8516
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	25.8	0.8293
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	28.0	0.8317
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	31.4	0.8499
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	33.2	0.8469
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	34.0	0.8488

Compare expression of checked genes

Lus10015355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.