Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62740 506 / 0 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 483 / 1e-174 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 458 / 1e-164 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT5G51570 348 / 4e-121 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 62 / 9e-11 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 54 / 4e-08 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007268 [exp] 581 / 0 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 521 / 0 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 496 / 1e-179 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036715 [exp] 466 / 1e-167 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10037213 [exp] 464 / 7e-167 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10038907 [exp] 336 / 3e-116 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 335 / 6e-116 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 60 / 7e-10 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078100 [exp] 523 / 0 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 498 / 1e-180 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 487 / 3e-176 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 349 / 1e-121 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 342 / 9e-119 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 294 / 5e-101 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 59 / 9e-10 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 59 / 1e-09 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 58 / 2e-09 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10015356 pacid=23160873 polypeptide=Lus10015356 locus=Lus10015356.g ID=Lus10015356.BGIv1.0 annot-version=v1.0 ATGGGTAATCTGTCATGCTGTGTGAAAGTGGATCAGTCAACAGTAGCAGTGAAGGAAAGGTTTGGTAGGTTTGAGAAAGTGCTTGAGCCAGGGTGCCATT GCATGCCTTGGTTCCTTGGAAGAAGTGTTGTTGGCAAGCTCTCCTTGCGCCTTCAGCAGCTAGATGTCCGTTGTGAGACCAAGACCAAGGACAATGTGTT TGTGAATGTTGTTGCTTCAGTGCAATACAGAGCACTCGCCCAGAAAGCAAGCGACGCTTTCTACAAGCTCAGCAACACCAGGTCCCAAATTCAGGCCTAC GTTTTCGACGTGATCAGAGCAAGTGTTCCAAAGCTGAACCTTGATGATGCTTTTGAGCAGAAGAACGAGATTGCCAAGGCTGTTGAAGATGAACTCGAGA AGGCCATGTCCGCATATGGGTATGAAATTGTGCAGACACTAATTGTTGATATTGAGCCTGACGAGCGTGTGAAGAAGGCGATGAACGAGATCAATGCTGC TGCAAGAATGAGGCTGGCTGCAAACGAGAAAGCAGAGGCGGAGAAGATAGTCCAGATCAAGAGAGCAGAAGGAGATGCAGAATCAAAGTTCCTGTCAGGG CTTGGGATCGCACGTCAGCGTCAGGCTATTGTTGACGGTCTGAGGGACAGTGTTCTGGGTTTCTCCGGCAACGTCCCAGGAACCTCAGCTAAGGATGTTC TGGACATGGTTCTCATTACCCAATACTTCGATACCATGAAGGAGATAGGTGCTACCAGCAAGTCCTCTGCAGTGTTCATCCCACATGGTCCAGGGGCCGT CAATGAAATTGCAGCCCAGGTTCGCGATGGACTCCTTCAGGCTAACCCTCTCAAGTGA
AA sequence Show only first row Show all	>Lus10015356 pacid=23160873 polypeptide=Lus10015356 locus=Lus10015356.g ID=Lus10015356.BGIv1.0 annot-version=v1.0 MGNLSCCVKVDQSTVAVKERFGRFEKVLEPGCHCMPWFLGRSVVGKLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAQKASDAFYKLSNTRSQIQAY VFDVIRASVPKLNLDDAFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDERVKKAMNEINAAARMRLAANEKAEAEKIVQIKRAEGDAESKFLSG LGIARQRQAIVDGLRDSVLGFSGNVPGTSAKDVLDMVLITQYFDTMKEIGATSKSSAVFIPHGPGAVNEIAAQVRDGLLQANPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	6.0	0.8498
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	8.0	0.8590
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	12.2	0.8708
AT2G20515			unknown protein		Lus10024890 [exp]	19.5	0.8610
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	20.9	0.8077
AT2G14660			unknown protein		Lus10033766 [exp]	22.2	0.8429
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	22.6	0.8139
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	22.7	0.8598
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	25.8	0.8316
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	31.3	0.8330

Compare expression of checked genes

Lus10015356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.