Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 385 / 5e-136 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 360 / 2e-126 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 265 / 6e-89 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 251 / 2e-83 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 152 / 2e-45 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 89 / 1e-21 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007267 [exp] 534 / 0 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10013271 [exp] 389 / 8e-138 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 378 / 1e-132 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 276 / 2e-92 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 260 / 7e-86 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 241 / 3e-79 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 222 / 1e-71 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 212 / 9e-68 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 209 / 1e-66 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078200 [exp] 419 / 2e-149 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 412 / 6e-147 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 403 / 2e-143 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 278 / 7e-94 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 262 / 1e-87 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.005G146800 [exp] 259 / 1e-86 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 253 / 5e-84 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 244 / 1e-80 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 166 / 2e-50 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 166 / 1e-49 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10015357 pacid=23160931 polypeptide=Lus10015357 locus=Lus10015357.g ID=Lus10015357.BGIv1.0 annot-version=v1.0 ATGGTGAAGGGTCCAGGTTTCTACTCTGAAATCGGCAAGAAGACCAAAGATCTATTGTACAAGGACTATCACAGCGACCAGAAGTTCACTGTCACCACCG TCTCTCCTGTTGGAGTTGCAATTACACATTCTGCAACTAAGAAAGGGGAGCTGTTTGTGGCTGATATCACTACTCAGCGGAAGAGCAAGAATGTGACAAC TGATATCAAAGTGGACACGGACTCCAACATCCATACCACCATCACTGTTGATGAACTTGCTCCTGGGCTTAAGACAATCTACAGCTTCAAAGTTCCAGAT CAAAGGTCTGGCAAGTTGGAGGTTCAATACAAGCATGACTATGCTGCTGTAGCTTCAAGCATTGGCTTGACAGCAAGCCCTGTTGTAAACTTCTCTGGTG TAATTGGAAGTGACGCTCTTTCCCTTGGCACTGATGTTTCTTTTGATATCAAAACTGGAAACTTCACCAAGTACAATGCTGGATTGAGCTATGCCAATGC AGATCTTGTTGCTGCTTTGTCATTGAATGACAAGGGTGACTCTCTTGTTGCTTCCTATTACCACAATGTGAACAAGTTCACTGCTGTTGGTGCTGAAGTG GGGCATAACTTATCTAGCAGTAAGACCACTATGACCGTTGGAAGCCAGCATGTATGGGATCCATTGACGACATTGAAGGCTCGCATGAACAACAATGGCA AGGCAAGTGCTCTAATCCAGCATGAATGGAGGCCGAGATCATTCTTCACCGTTACCGGAGAGGTGGACACCAAGGCAATTGAAAAGAGTGCTAAGGTGGG AATGGCTCTTGCTCTCAAGCTATGA
AA sequence Show only first row Show all	>Lus10015357 pacid=23160931 polypeptide=Lus10015357 locus=Lus10015357.g ID=Lus10015357.BGIv1.0 annot-version=v1.0 MVKGPGFYSEIGKKTKDLLYKDYHSDQKFTVTTVSPVGVAITHSATKKGELFVADITTQRKSKNVTTDIKVDTDSNIHTTITVDELAPGLKTIYSFKVPD QRSGKLEVQYKHDYAAVASSIGLTASPVVNFSGVIGSDALSLGTDVSFDIKTGNFTKYNAGLSYANADLVAALSLNDKGDSLVASYYHNVNKFTAVGAEV GHNLSSSKTTMTVGSQHVWDPLTTLKARMNNNGKASALIQHEWRPRSFFTVTGEVDTKAIEKSAKVGMALALKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	0	1
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10022252 [exp]	3.2	0.8822
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10031482 [exp]	5.1	0.8572
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	5.3	0.8854
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	15.4	0.8251
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	15.6	0.8345
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	18.7	0.8539
AT1G06790			RNA polymerase Rpb7 N-terminal...		Lus10035380 [exp]	18.7	0.7580
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	21.4	0.8759
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	23.1	0.8738
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	23.9	0.8769

Compare expression of checked genes

Lus10015357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.