Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01270 350 / 2e-119 Pectate lyase family protein (.1) AT5G15110 346 / 8e-118 Pectate lyase family protein (.1) AT1G14420 319 / 1e-107 AT59 Pectate lyase family protein (.1) AT2G02720 311 / 1e-104 Pectate lyase family protein (.1) AT4G13710 293 / 3e-97 Pectin lyase-like superfamily protein (.1.2) AT5G48900 290 / 7e-97 Pectin lyase-like superfamily protein (.1) AT3G07010 289 / 2e-96 Pectin lyase-like superfamily protein (.1) AT1G67750 285 / 8e-95 Pectate lyase family protein (.1) AT3G24230 285 / 2e-94 Pectate lyase family protein (.1) AT3G24670 282 / 2e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033018 [exp] 521 / 0 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 452 / 1e-159 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 447 / 8e-158 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 340 / 6e-116 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 338 / 3e-115 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 325 / 7e-110 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 313 / 3e-105 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10011885 [exp] 292 / 4e-97 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 291 / 6e-97 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078400 [exp] 419 / 1e-146 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 408 / 2e-142 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.008G148800 [exp] 353 / 5e-121 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 339 / 1e-115 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.001G052300 [exp] 283 / 2e-93 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 281 / 2e-93 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 281 / 3e-93 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 281 / 4e-93 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 279 / 1e-92 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 277 / 1e-91 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10015359 pacid=23160910 polypeptide=Lus10015359 locus=Lus10015359.g ID=Lus10015359.BGIv1.0 annot-version=v1.0 ATGAACATCAAGCTGAACAAGGAGCTGATCATGACGAGCAATAAAACTATCGACGGCCGCGGAGCTAACGTCCACATTGCCTTTGGCGCGGGGATTACCA TTCAATTTGTTTGTAACGTGATTATACATGGGATTCAAATCCACCACATTGTGGCCACAAGTGGGGGATTGATTAGGGATTCGGTTGACCATTACGGGCA TAGGACTCAAAGCGATGGCGATGGTATCTCCATCTTCGGCTCAAGCAATGTATGGATCGATCATGTATCCATGTCTCGCTGCACTGATGGGCTAATTGAT GCAATTCAAGGATCTACTGCAATCACCATCTCAAATTCTCATTTTACCCACCACAATGACGCAATTTTGTTGGGGGCAAGTGATAGCTTCTCTGGAGATC AATTTATGCAAATAACAGTGGCATACAACCATTTCGGACAAGGACTAGTGCAGAGGATGCCAAGATGCAGATGGGGATTCTTCCATGTTGTAAACAATGA CTACACCCATTGGCGTCTATATGCCATTGGAGGTAGCAAACACCCAACCATTATCAGCCAAGGCAATCAATTCATTGCTCCACACGAGAAGGAACTGAAA CAGGTCACAAAGAGAGACTATGCTGAGGAACATGAGTGGAGGACATGGATATGGAAATCAGAGAAAGACCACTTCTTGAATGGAGCTTATTTCATAGAAT CAGGTGAAACAAGTTTGCGGCCAAACCCAGCTAAGAAGTTCATGATCACACCAAAACCAGGAGTACTTGCAACCAAGATGACCAGATTTGCTGGGGCGCT TCACTGCAAACCTAGGAAAAAGTGTTAG
AA sequence Show only first row Show all	>Lus10015359 pacid=23160910 polypeptide=Lus10015359 locus=Lus10015359.g ID=Lus10015359.BGIv1.0 annot-version=v1.0 MNIKLNKELIMTSNKTIDGRGANVHIAFGAGITIQFVCNVIIHGIQIHHIVATSGGLIRDSVDHYGHRTQSDGDGISIFGSSNVWIDHVSMSRCTDGLID AIQGSTAITISNSHFTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSKHPTIISQGNQFIAPHEKELK QVTKRDYAEEHEWRTWIWKSEKDHFLNGAYFIESGETSLRPNPAKKFMITPKPGVLATKMTRFAGALHCKPRKKC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10015359 [exp]	0	1

Compare expression of checked genes

Lus10015359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.