Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28715 119 / 3e-32 ATPase, V0/A0 complex, subunit C/D (.1.2) AT3G28710 116 / 8e-31 ATPase, V0/A0 complex, subunit C/D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033021 [exp] 266 / 6e-87 AT5G25150 55 / 1e-07 TBP-associated factor 5 (.1) Lus10030672 [exp] 125 / 3e-34 AT3G28715 693 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10005252 [exp] 125 / 3e-34 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079100 [exp] 180 / 4e-54 AT5G25150 65 / 8e-11 TBP-associated factor 5 (.1) Potri.017G079200 [exp] 122 / 4e-33 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01992 [flax] [poplar] vATP-synt_AC39 ATP synthase (C/AC39) subunit
Representative CDS sequence Show only first row Show all	>Lus10015361 pacid=23160851 polypeptide=Lus10015361 locus=Lus10015361.g ID=Lus10015361.BGIv1.0 annot-version=v1.0 ATGTACGGATTCGAGGCTCTCTCCTTCAATGTTCACGACGGTTACCTGGAGGCCATCGTCAGGGGACACAGATCGGGACTTCTTACTGCCGCTGATTACA ACAATCTCTGCCAGTGCGAGTCCCTTGATGACATCAAGATGCACCTCTCCTCTACCGAGTATGGCCCCTATCTTCAGAACGGAAAGAATCACAAGGCATT CGTTGATGCTTTAAGCTTGTATCTTAGAAAAATGGACCATGCAAAAAGTTGGCGTCCAGCAGTCTATAAGGCGAATCTATTCTCGTTTGCCATGGTTCCT TCAAAACCCATTCTCTGCACCGGTGGAATGGGCAAAGGGCTGCTTTGGGACATGAGGAGAAACCAGGAGACTATAAAACCAGAACCAGTTGCTGAGTTGG ACGGACATATCGGTCCAATAACACAGTTACAGGCTGACAGATACAAGATAGTTGCAGGAGGGCCAGAGGATAATCGTGTAAATATCTGGGAAGCTGACAA TGGCACACAAACAAACTCCTTGATGTATTGTGGTTCAGAGGATGCAGAAAGCGGCTCTTCTGGGTGTATGGCCGTGGCTGTTGATGGAACTCGGATTGTG ACTGCTGCTACTAGTAGTGAAGAATATGGACTTATTCGTTTCAGAGATTTCTTGCATGCTACAGATGACAGCGATGGTAGCTAG
AA sequence Show only first row Show all	>Lus10015361 pacid=23160851 polypeptide=Lus10015361 locus=Lus10015361.g ID=Lus10015361.BGIv1.0 annot-version=v1.0 MYGFEALSFNVHDGYLEAIVRGHRSGLLTAADYNNLCQCESLDDIKMHLSSTEYGPYLQNGKNHKAFVDALSLYLRKMDHAKSWRPAVYKANLFSFAMVP SKPILCTGGMGKGLLWDMRRNQETIKPEPVAELDGHIGPITQLQADRYKIVAGGPEDNRVNIWEADNGTQTNSLMYCGSEDAESGSSGCMAVAVDGTRIV TAATSSEEYGLIRFRDFLHATDDSDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10015361 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	8.9	0.7238
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	16.6	0.7125
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	17.3	0.6990
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	22.4	0.6952
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	29.5	0.6598
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	31.4	0.6933
					Lus10040651 [exp]	35.4	0.6258
					Lus10001325 [exp]	35.7	0.6297
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	35.9	0.6573
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	39.8	0.6747

Compare expression of checked genes

Lus10015361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.