Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28720 580 / 0 unknown protein AT5G58100 73 / 2e-13 unknown protein AT4G16180 48 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033019 [exp] 566 / 0 AT3G28720 450 / 2e-155 unknown protein Lus10033020 [exp] 412 / 3e-141 AT3G28720 599 / 0.0 unknown protein Lus10008552 [exp] 67 / 1e-11 AT5G58100 886 / 0.0 unknown protein Lus10027581 [exp] 67 / 2e-11 AT5G58100 1451 / 0.0 unknown protein Lus10037780 [exp] 42 / 0.0008 AT4G16180 1215 / 0.0 unknown protein Lus10017062 [exp] 42 / 0.001 AT4G16180 1226 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123900 [exp] 659 / 0 AT3G28720 852 / 0.0 unknown protein Potri.017G078700 [exp] 655 / 0 AT3G28720 823 / 0.0 unknown protein Potri.006G080700 [exp] 73 / 2e-13 AT5G58100 1315 / 0.0 unknown protein Potri.018G150600 [exp] 70 / 1e-12 AT5G58100 1362 / 0.0 unknown protein Potri.010G146800 [exp] 47 / 2e-05 AT4G16180 1235 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015362 pacid=23160951 polypeptide=Lus10015362 locus=Lus10015362.g ID=Lus10015362.BGIv1.0 annot-version=v1.0 ATGCACGGCCGCCCAAAGTCGGATAAGGCTCTCCTTTCCGACTTGGCTTCCTTGGTTTGGAGCGCGTATCAGGTACTTCTGGTGCCTTCCCTGAGAATTC CTGTCCATTTTGACAACTCCTTGATTGTTCAGTTCGTTCATATTTATGCGTCTAAGAACGGTAAGGATCAGAGTGGATTGGACTGGAAAGCGATTGAGAG AAGTTTTAAGGATGGTGCTAGTGAGGATGGGTTGTTGTTGGGGGATCAGTCTCTGACATTCAAAAGCTATGAAGTGAAATATGAGGAGTGTTCGATTTGT TCTTTTGCGATTTCCAAGTCTGTTAATTCGTATACTTCTAGGTTCTTGTTTGATAACTATACTCTGATTGTGAGCGAGTATTTGGATTCCAAGAGATTGC ATCAGATATTGTCTGACTCAGCTCAAGAGTTTAGGAGGGTAGCTGGAATTCCCGAGGAAGATGAGGAATTTCTCGGTAGAGTACTCCCAGTCTATGTGTT TGATTTGGATTACAGTATGTTGTTGTTGCTTGATCGTTACCATCAGTCAGTTTCCTTCAGAGATATGGTTGTAGCTGTTAGGACAAGGACTACACAGACT GTGAGTGATTATAGCTGCAACGGTCGTCATGTGTTTACACACACAAGAGATCTCGAGCGCCCTCTTGTTGGTTCGATTCTACAGAGTATGTGGGGAGTTT CTCCTACTCATTTGTCATGGAGTGCAAGGCATAATACAACTCTAGTGGACTACACATGGAGTGTTGGGCAGACACCGTTTGGTCCTTTCTCCGAATCCTC TACGCTATCATTCGTTCAGAAAGATGCTGCTAGGAGAAATGTGCTCTTGACATCGTTGAATTACAGTATAACAAGTGCAGTTGATGTTCTTGGATCCATC CAATCTCACGGTGGGGATAGGAAGCTTCTTAAAGGCAATCAGCACGTTGAGTTTGCACGGCGATGGAACTTGTTCAAGCACAAGATAGACAAGGCTATTT CTGCAATGTCGCGGTTGGATTTTGAGATGGCTTCGTATTACTTGAGGTCCTCAGATCATGACCTGTACGCCATTCACTCCCTAGTGTACCTTGCATCACA TGAATTGGAGGCATCACTTGCTTGTTTCAAAGATCCGCCATTCCCATGGGGCTCGGTGTCATTATATGCAGCTGGGTTCTTTGGTGTGTGTTATGTGTAT GCAAAGAGGGACAGGCTTTTCAGGAACAAGAGGAAGCAGTTTTGA
AA sequence Show only first row Show all	>Lus10015362 pacid=23160951 polypeptide=Lus10015362 locus=Lus10015362.g ID=Lus10015362.BGIv1.0 annot-version=v1.0 MHGRPKSDKALLSDLASLVWSAYQVLLVPSLRIPVHFDNSLIVQFVHIYASKNGKDQSGLDWKAIERSFKDGASEDGLLLGDQSLTFKSYEVKYEECSIC SFAISKSVNSYTSRFLFDNYTLIVSEYLDSKRLHQILSDSAQEFRRVAGIPEEDEEFLGRVLPVYVFDLDYSMLLLLDRYHQSVSFRDMVVAVRTRTTQT VSDYSCNGRHVFTHTRDLERPLVGSILQSMWGVSPTHLSWSARHNTTLVDYTWSVGQTPFGPFSESSTLSFVQKDAARRNVLLTSLNYSITSAVDVLGSI QSHGGDRKLLKGNQHVEFARRWNLFKHKIDKAISAMSRLDFEMASYYLRSSDHDLYAIHSLVYLASHELEASLACFKDPPFPWGSVSLYAAGFFGVCYVY AKRDRLFRNKRKQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28720			unknown protein		Lus10015362 [exp]	0	1
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	2.4	0.9356
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	3.2	0.9148
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	6.0	0.9128
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	9.8	0.9012
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	11.0	0.9061
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	11.0	0.8962
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	12.0	0.8927
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	15.5	0.9032
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	18.7	0.8785
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	21.5	0.9022

Compare expression of checked genes

Lus10015362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.