Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14570 872 / 0 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 79 / 5e-15 alpha/beta-Hydrolases superfamily protein (.1) AT5G24260 58 / 3e-08 prolyl oligopeptidase family protein (.1) AT2G47390 56 / 1e-07 Prolyl oligopeptidase family protein (.1) AT1G76140 51 / 2e-06 Prolyl oligopeptidase family protein (.1.2) AT1G20380 50 / 5e-06 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039405 [exp] 1277 / 0 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10006641 [exp] 384 / 9e-128 AT4G14570 194 / 5e-56 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10032765 [exp] 75 / 2e-13 AT5G36210 606 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10022408 [exp] 57 / 5e-08 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10010007 [exp] 56 / 1e-07 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 54 / 5e-07 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10025027 [exp] 54 / 7e-07 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021758 [exp] 52 / 2e-06 AT5G36210 949 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018107 [exp] 49 / 2e-05 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160400 [exp] 1035 / 0 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.002G128700 [exp] 76 / 7e-14 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G013900 [exp] 61 / 4e-09 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 58 / 3e-08 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G196000 [exp] 58 / 3e-08 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247400 [exp] 58 / 3e-08 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 57 / 4e-08 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.014G120600 [exp] 56 / 1e-07 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.015G013400 [exp] 55 / 3e-07 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.012G014900 [exp] 47 / 8e-05 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10015363 pacid=23160940 polypeptide=Lus10015363 locus=Lus10015363.g ID=Lus10015363.BGIv1.0 annot-version=v1.0 ATGGCCGTTTCTAAAGCTGATCCGACGAACACACTACCGTTGGGATTGGATCCAACGATGGAGGATGAGTACGATTCCCAATCCAAGTTGCTCAGAGAGT TCGCAAGCATATCAAGTATTGACAAGGCGTGGACTTTCAAGTCCCAGAACGGTTGGATTTACATTTTACTCTTTCTTTCGACTTTTTGTTTCTGGGCTAT CCCTTTGGTGGCTTATTTAGATGTCTGGGGAATTTTTGTTGACATGAAATGGGTTGAAGCAGGAATTGGGTCGCAGGCAATGTTTGCAGTTAGCCAAGCG AATCTGCTGGCTAATAAAAGGAGGAAATTCATTGTGTCTACTCGTCTGTCAAAGGGGAATGGCGATAGTTCTGTGAGCTTTCAGTGGGCACCCTTTCCTG TGGAGATGGCAGGTGTGGCTACTATGCTTCCATCTCCTTCAGGTTCCAAACTTTTAGTTGTCAGGAACCCTGAGAATGACTCTCCAGTTCAGTTTGAAAT CTGGTGCCAGTCTCATTTGGAGAAAGAGTTCCTGATTCCACAGTCAGTTCATGGCTGTGTGTATACTGATGGCTGGTTTGAGGGGATTTCATGGAACTCT GATGAAACGCATATCGCATATGTTGCTGAGGAGGCACCTCCCACCAAGCCTAACTTTAATAATCAGGGCTATAAGAAAGGTGGTTCAATGGAAAAGGATT GTGGTAGCTGGAAAGGACTAGGGGAATGGGAGGAAGAATGGGGAGAAACATATGCTGGGAAAAGACGGCCTGTGGTCTTTGTTATCGACATTAACAGTGG AGAGGTTCAGTCTGTCAAAGGAATTGCAAAACATTTGAGTGCTGGCCAAGTTGTTTGGGCTCCATCAACCGATAGCTCAGAGAATTATTTGGTCTTTGTT GGCTGGTCATCAGAGAGAAGGAAGCTTGGTATAAAGTATTGCTATAACAGGCCTTGTGCCTTATATGCTGCCAGAGTACCGGAGTTTGGGTCAGATGCCA AATGTGAAGAGAATGAAATATCTGTGGTAGGCTCATCTGTGATTAATGTAACTCAAGGAATGGGAAGTGCCTTCTTCCCTCTGTTCAGCCCAGATGGAAA GTCTCTAGTTTTTTTATCTGCTCAAAGCTGTGTGGACTCGGGTGCACATTGGGGAACCGAATCCCTTCATCGAATTGATTGGCCTGCTGACCTAAAGGCA CTCTCATCTGCAAACGTTGTCGAAGTGATTCCGATCGTTCAATGTCCAGAAGATGGTGGCTTTCCTGGGCTATACTATGCGGGTTTGCTTCGTAATCCAT GGCTTTCTGATGGATCCACTATAGTTCTAAACTCTGTGTGGCACAGTAGTGAGGTTATACTGGCTGTGAATGTCTTAAGTGGTGTTCTGAGGCGAATCAG TCCTTATGACTCAAATTCTGGATGGCGTGCTCTTACACTAGACGATGACAACATCATTGCTGTTTCAAGCAGCCCAGTAGATCTTCCTGAAATCAAGTAT GGCCATCTTGCCGATAAAGAAGTTCAAACTGCTGTTTGGAATTGGTTAAGCGTGCCAAGTCCCATGATTAAATGCTCTGAGAAGGTTAAATCTCTGCTCT CGTCTCGTGAGTTCAGCATTCTGAAGATCCCAATCACGGACCTGTCTACTAATTTGGCAAAAGGTGCCACTAAGCCTTTCGAAGCAATATACGTCTCGTG CACTTCCAAGAAAAGTGATCAATTAGATCCAATGATTGTCGTCCTTCATGGAGGCCCGCATTCTGTGTCAGTATCAAGCTTTTCGAAGAATCTTGCATTT CTGACTTCGCTAGGATACAGTTTGTTGATTGTGAATTACAGAGGATCATTGGGGTTCGGTGAGGAAGCATTGCAATCTCTTCCAGGAAAAGTTGGAACAC AGGATGTGAATGATGTGCTTGCAACTGTAGACTATGCCATTGACAAGGGACTAGCTAACCCAACTAAAATAGCCGTGGTTGGTGGTTCCCATGGGGGATT CCTTACAACTCACCTGATTGGCCAGGCGCCAGAAAAGTTTGCTGCCGCAGCTGCAAGGAATCCAGTCTGCAATCTTGCCTCAATGGTGGGTACAACAGAC ATCCCAGATTGGTGCTATTTTGAAGCCTATGGACGTGAGGGGAAGGATAAGTTTACAGAGGCAACTTCAGCTGATGACCTTGCCGTCTTTCACAGCAAAT CTCCTATTGCACACATCTCAAAATATGCTCGTGCCTTGAAGGAGATGGGAGTGGAGACAAAGATGATAATTTTTCCAAACGACGTTCATGGAATTGAGAG ACCGCAATCTGACTACGAGAGCTTCCTCAACATTGGGGTTTGGTTCAAGAAGTACTGCAACTGA
AA sequence Show only first row Show all	>Lus10015363 pacid=23160940 polypeptide=Lus10015363 locus=Lus10015363.g ID=Lus10015363.BGIv1.0 annot-version=v1.0 MAVSKADPTNTLPLGLDPTMEDEYDSQSKLLREFASISSIDKAWTFKSQNGWIYILLFLSTFCFWAIPLVAYLDVWGIFVDMKWVEAGIGSQAMFAVSQA NLLANKRRKFIVSTRLSKGNGDSSVSFQWAPFPVEMAGVATMLPSPSGSKLLVVRNPENDSPVQFEIWCQSHLEKEFLIPQSVHGCVYTDGWFEGISWNS DETHIAYVAEEAPPTKPNFNNQGYKKGGSMEKDCGSWKGLGEWEEEWGETYAGKRRPVVFVIDINSGEVQSVKGIAKHLSAGQVVWAPSTDSSENYLVFV GWSSERRKLGIKYCYNRPCALYAARVPEFGSDAKCEENEISVVGSSVINVTQGMGSAFFPLFSPDGKSLVFLSAQSCVDSGAHWGTESLHRIDWPADLKA LSSANVVEVIPIVQCPEDGGFPGLYYAGLLRNPWLSDGSTIVLNSVWHSSEVILAVNVLSGVLRRISPYDSNSGWRALTLDDDNIIAVSSSPVDLPEIKY GHLADKEVQTAVWNWLSVPSPMIKCSEKVKSLLSSREFSILKIPITDLSTNLAKGATKPFEAIYVSCTSKKSDQLDPMIVVLHGGPHSVSVSSFSKNLAF LTSLGYSLLIVNYRGSLGFGEEALQSLPGKVGTQDVNDVLATVDYAIDKGLANPTKIAVVGGSHGGFLTTHLIGQAPEKFAAAAARNPVCNLASMVGTTD IPDWCYFEAYGREGKDKFTEATSADDLAVFHSKSPIAHISKYARALKEMGVETKMIIFPNDVHGIERPQSDYESFLNIGVWFKKYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10015363 [exp]	0	1
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	5.7	0.7608
AT1G77280			Protein kinase protein with ad...		Lus10000968 [exp]	14.5	0.7560
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	19.4	0.6815
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	20.6	0.7263
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	24.9	0.7360
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	27.8	0.7442
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	31.4	0.7025
AT1G77460			Armadillo/beta-catenin-like re...		Lus10042730 [exp]	31.7	0.6826
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10026370 [exp]	40.4	0.7249
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	41.0	0.7265

Compare expression of checked genes

Lus10015363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.