Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39900 1047 / 0 Small GTP-binding protein (.1) AT5G08650 580 / 0 Small GTP-binding protein (.1) AT5G13650 139 / 4e-34 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 131 / 1e-31 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G56070 106 / 1e-23 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 102 / 3e-22 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 100 / 2e-21 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT2G45030 99 / 3e-21 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 99 / 3e-21 Translation elongation factor EFG/EF2 protein (.1) AT1G06220 92 / 5e-19 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007250 [exp] 1307 / 0 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10035968 [exp] 611 / 0 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 553 / 0 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10007535 [exp] 133 / 2e-32 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10002179 [exp] 124 / 2e-29 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 123 / 4e-29 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10031185 [exp] 107 / 1e-25 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10012200 [exp] 110 / 7e-25 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039840 [exp] 108 / 2e-24 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079800 [exp] 1079 / 0 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 592 / 0 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 140 / 8e-35 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 132 / 5e-32 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.005G098100 [exp] 105 / 2e-23 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 104 / 5e-23 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 104 / 5e-23 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G109900 [exp] 99 / 2e-21 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 99 / 2e-21 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.009G152500 [exp] 98 / 8e-21 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06421 [flax] [poplar] LepA_C GTP-binding protein LepA C-terminus CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10015364 pacid=23160846 polypeptide=Lus10015364 locus=Lus10015364.g ID=Lus10015364.BGIv1.0 annot-version=v1.0 ATGGGTTCCGTTTACAGAGCTTCGAAAACCCTAAAATCTCTCAGATATGCTACTGAGAAATTCGACACACTTACTCATGGATTAGGATCAAATGATCACC GTTGGCAGCTGACTAGAGGGCTCTGCTCTCACCCTCGCCAAAACAACAAAGATAACCAAATAGATTTGACCCAGTACCCGCCGGAGAGAATTAGGAACTT CTCCATTATTGCCCACGTCGACCATGGTAAGTCGACCCTCGCTGACCGTCTGCTGGAGCTCACCGGTACTATCAAAAGAGGCCATGGCCAGCCTCAGTAT CTCGATAAATTACAGGTAGAGAGAGAAAGGGGAATCACGGTTAAAGCTCAGACAGCCACTATGTTCCACAAGTATATTGATGGTTCCAAGGAGTCACAGA TGCATCTTCTTAACTTAATTGACACACCTGGTCACGTAGACTTTAGCTATGAAGTCTCCAGATCTTTAGCGGCTTGCCAAGGTGCCCTTTTGGTGGTTGA TGCCGCTCAAGGTGTCCAGGCCCAAACAGTGGCTAACTTTTATCTTGCCTTTGAATCTAACCTCACAATTATTCCTGTCATCAATAAAATTGACCAGCCG ACAGCTGATCCTGATCGCATCAAAGCTCAACTTAAGTCCATGTTTGATCTTGAGCCGAGTGATTGTCTTCTGACGTCTGCTAAAACAGGACAAGGTCTTG AGCACGTCCTGCCTGCTGTTATTGAGAGGATTCCTCCTCCTCCTGGGGTTGGTGATGCGCCTTTGCGTATGCTTTTGTTGGATTCTTATTATGATGAATA CAAGGGAGTGATTTGCCATGTCGCAGTTGTTGATGGCATTTTGCATAAGGGAGATAAGATATCAGCCGCTGCCACAGGCCAATCATATGAAGTTCTGGAT GTAGGATTCATGCACCCTGAACTCACTCAAACTGGAATTCTTCTGACCGGTCAAGTAGGATATGTTGTGACTGGAATGAGATCAACAAAAGAAGCACGTA TTGGAGATACTTTGTTTCACACCAAAAGCATCGTAAAGCCTCTTCCTGGCTTCAAACCTGTAAGACATATGGTCTTCTCTGGTGTTTATCCGGTAGATGG ATCTGACTTTGAAGCTCTCAACCATGCAATAGAGAGACTGACATGCAATGATGCCAGTGTCTCTGTCACTAAAGAGAGTAGCACTGCCCTTGGTCTGGGT TTCAGATGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGTCTTGAACAGGAATACGGAGCTCATGTTATTTCCACTGTCCCAACTGTTC CGTATATCTTTGAATATTCTGATGGAAGCAAAGTGGAAGTTCAGAACCCTGCTGCTTTAACGTCAAACCCGAAGAAGCGAGTTACAGCTAGTTGGGAACC TACAGTATTAGCCACGATTATTATCCCTAGTGAATATGTTGGCCCAGTTATTACCCTTTGTTCTGAACGAAGGGGGCAGCAGTTGGAGTACTCATTCATC GATAGCCAACGCGCCTTTATGAAATACCGCCTGCCTTTGAGAGAAATTGTTGTTGATTTCTACAATGAGCTGAAGAGTATGACCTCAGGATATGCGTCAT TTGATTATGAAGATTCAGAGTATCAACAAGCTGATCTGGTGAAACTTGATATTCTGTTGAATGGCCAGCCAGTTGATGCTATGGCAACAATTGTCCACAA CTTGAAGGCACAACGTGTTGGCCGCGAATTAGTGGATAAGCTGAAGAAATTTATAGATAGGCAAATGTTTGAGATAAGTATACAAGCAGCAATTGGATCG AAAGTTATTGCAAGAGAGACGATTTCAGCCATGAGGAAGAATGTTCTAGCGAAGTGTTACGGTGGGGATGTTAGTCGGAAGAGGAAACTACTGGAGAAGC AGAAGGAAGGAAAGAAAAGAATGAAGCGCATTGGGTCAGTGGATATACCTCAAGAAGCTTTCCATCAGCTATTGAAGGTGTCATAG
AA sequence Show only first row Show all	>Lus10015364 pacid=23160846 polypeptide=Lus10015364 locus=Lus10015364.g ID=Lus10015364.BGIv1.0 annot-version=v1.0 MGSVYRASKTLKSLRYATEKFDTLTHGLGSNDHRWQLTRGLCSHPRQNNKDNQIDLTQYPPERIRNFSIIAHVDHGKSTLADRLLELTGTIKRGHGQPQY LDKLQVERERGITVKAQTATMFHKYIDGSKESQMHLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESNLTIIPVINKIDQP TADPDRIKAQLKSMFDLEPSDCLLTSAKTGQGLEHVLPAVIERIPPPPGVGDAPLRMLLLDSYYDEYKGVICHVAVVDGILHKGDKISAAATGQSYEVLD VGFMHPELTQTGILLTGQVGYVVTGMRSTKEARIGDTLFHTKSIVKPLPGFKPVRHMVFSGVYPVDGSDFEALNHAIERLTCNDASVSVTKESSTALGLG FRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKVEVQNPAALTSNPKKRVTASWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFI DSQRAFMKYRLPLREIVVDFYNELKSMTSGYASFDYEDSEYQQADLVKLDILLNGQPVDAMATIVHNLKAQRVGRELVDKLKKFIDRQMFEISIQAAIGS KVIARETISAMRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKRIGSVDIPQEAFHQLLKVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39900			Small GTP-binding protein (.1)		Lus10015364 [exp]	0	1
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	4.6	0.8837
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	6.9	0.8730
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	15.9	0.8762
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	27.2	0.8594
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	32.2	0.8445
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	32.5	0.8393
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	34.4	0.8211
AT1G33330			Class I peptide chain release ...		Lus10008558 [exp]	37.9	0.8071
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	42.2	0.8401
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	46.3	0.8341

Compare expression of checked genes

Lus10015364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.