Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15140 384 / 2e-130 Galactose mutarotase-like superfamily protein (.1) AT3G47800 371 / 2e-127 Galactose mutarotase-like superfamily protein (.1) AT3G17940 303 / 8e-101 Galactose mutarotase-like superfamily protein (.1) AT3G01260 239 / 5e-75 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007251 [exp] 651 / 0 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 537 / 0 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 513 / 0 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 365 / 7e-125 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 305 / 3e-101 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 266 / 1e-86 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 263 / 4e-85 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 120 / 2e-32 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 64 / 3e-12 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129700 [exp] 449 / 8e-158 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 434 / 4e-152 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 429 / 4e-150 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 417 / 2e-145 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 384 / 1e-132 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 322 / 3e-108 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 306 / 5e-102 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10015365 pacid=23160939 polypeptide=Lus10015365 locus=Lus10015365.g ID=Lus10015365.BGIv1.0 annot-version=v1.0 ATGGTTATCCACCAAAGCTCCCCTCATTCAGTAGGAGGAGTATTAAAGGAGCCCCTGATCATCAGGAAAAAGCACAAGAAAATCGTCAAAGCATCAGAAG TGGCCAAGTTCGTTGTAGTGGTGCTTATGATTATGCTTCTTCTTCTTCTTCTTGTGTGTTTGAGTGTTGTTGGTTCTGGGTCGTCAGTGGAAGAGAAGAT TGGGAGTTACGAGCTGAAGAAAGGGAACATGTCTCTCAAACTCACCAACTATGGTGCCCATATGATGTCCTTCATCATACCTGACAAACTTGGGAAGTTG AACGATGTGATTCTTGGATACGACACTGCTGAGGCGTACAAGAATGACACAACAAACTTTGGAGCCACCGTCGGAAGAGTTGCAAATAGAATCGGGGGAG CTCAATTTACTCTCAATGGAACTCTCTACAAGTTGATACCCAACGAAGGAAGCAACATTCTTCATGGTGGTCCACTTGGATTTGGAAAAGTCGTATGGAA AGTGAAAGAGTACCAACCCAATAGCCCTAAACCTAGCATAGTTTTCCTATACCACAGCCCAGATGGTGATCAAGGATTCCCGGGCGATGTAGTAGCCACC GTGAAGTACACACTTCTGGAGTACAACCAGCTGAGCATCAAACTGAAAGCCAGAGCATTGAACAAAGCAACTCCGGTGAATCTAGCCAACCATGCTTACT GGAACCTCGGTGGGCACGACAGTGGAGACATACTGTCGGAAGAGCTTCAAATATTGGCTTCTCATTACACCCCTGTCGATAACCAGCTCATCCCAACTGG GAAAATAGATTCGGTAGTGGGAACGCCATATGATTTCACGACGCCAAAATCAGTAGGGAGCAGAATCGGCCAGCTGAAACTTGGGTACGATATCAACTAC GCGCTCGATGCGAGCCCCGCGCACAGAAATGGCAACAAGAGGGGGATGAGGAAAGCTGCGTTTGTTCACGACAGGAAATCGGGCAGAGTGATGGAGTTGT TCACGAATCAGCCAGGGGTGCAGCTGTATACGAGCGGCCAGCTCGGAGACACAAAGGGGAAAGGTGGAGTGGTGTACAAGAAACATGGTGGTCTTTGCTT GGAGACTCAAGGCTTCCCTGACGCCGTTAATCATCCAAACTTCCCTTCAACTATTGTAACTCCGTCCAGCCCTTATGATCACCACATGCTGCTTAGGTTT TCTACTTCTTAA
AA sequence Show only first row Show all	>Lus10015365 pacid=23160939 polypeptide=Lus10015365 locus=Lus10015365.g ID=Lus10015365.BGIv1.0 annot-version=v1.0 MVIHQSSPHSVGGVLKEPLIIRKKHKKIVKASEVAKFVVVVLMIMLLLLLLVCLSVVGSGSSVEEKIGSYELKKGNMSLKLTNYGAHMMSFIIPDKLGKL NDVILGYDTAEAYKNDTTNFGATVGRVANRIGGAQFTLNGTLYKLIPNEGSNILHGGPLGFGKVVWKVKEYQPNSPKPSIVFLYHSPDGDQGFPGDVVAT VKYTLLEYNQLSIKLKARALNKATPVNLANHAYWNLGGHDSGDILSEELQILASHYTPVDNQLIPTGKIDSVVGTPYDFTTPKSVGSRIGQLKLGYDINY ALDASPAHRNGNKRGMRKAAFVHDRKSGRVMELFTNQPGVQLYTSGQLGDTKGKGGVVYKKHGGLCLETQGFPDAVNHPNFPSTIVTPSSPYDHHMLLRF STS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	0	1
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10034026 [exp]	2.4	0.8950
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	4.9	0.9005
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	7.1	0.9149
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	8.7	0.8647
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	10.6	0.8729
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	13.4	0.8935
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	14.3	0.8830
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	17.3	0.8905
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	18.1	0.8428
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	18.6	0.8930

Compare expression of checked genes

Lus10015365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.