Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55160 2203 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007253 [exp] 2309 / 0 AT3G55160 1318 / 0.0 unknown protein Lus10007252 [exp] 1858 / 0 AT3G55160 952 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128601 [exp] 2724 / 0 AT3G55160 2400 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10350 [flax] [poplar] DUF2428 Putative death-receptor fusion protein (DUF2428)
Representative CDS sequence Show only first row Show all	>Lus10015366 pacid=23160943 polypeptide=Lus10015366 locus=Lus10015366.g ID=Lus10015366.BGIv1.0 annot-version=v1.0 ATGTCGGCGAAATGGCGGGCACTGCAGCACCGTCACCGTTACACATACAGTGCCGTGATTTTTCCACATTCATATGCAGACATCTTATCGCACTCTCTCT TAGCATCCAATCCCAAGTGTTCAGCTTTCGTGGAAGATCTCAATAAGCTAGTTTCGCTTAATTCCATCTACACTCAGATAGCTCATGTCAAGAGCTTGGC TTCTTCCTTCTCCAACTTGGTAAGAGATATAGAAACTGATGATTCGCTTTTGGAATTGGCATGTCGGTTTTACTTGGAAGTCTTGTTCATGGAGAACTCC CCTCCTCTGCACCGAACTTTGGTCTCTGGTTTGGCGAGAGTTGGCAACGCTGAGAGGCAATCTTTGATCCACAAGTGTTTCGCAGAGCTTTGCAAGGGGT ACGGAAGCGACAAAGGGAAAGGGTCACTGAAGAAGAGGTTCTGCTTATCTAAGGTTGCGTTATCTTTCATGGGCATGCCCAAGTTGGGTTATTTGGTGGA TATAATTGAAGATTGCGTCGTTTTGGTTGCCTGGGATGTTGTTATTGGGTTGGAAAGTGTGGTCTCGGAGACTGAAAAGTTGGCAAGGCCGTCTCCTATT GTTCTGGAGCAATGCCAGGATGCGTTGTCTTGTTTGTACTACTTGCTTCAGCGGTTCCCGGACAAACTGAACCATTCTAATCATGTTGATGCCGATGACA ATTTAAGCGTTTTGGAGAGGGTATTTAAGGTTTTGATAAGTGTGCTCAAGTCGTTGGCTTTTACTAGGGATTGTTTAGTGGCGGCTGGTGTGAGTTTGTG TGCTGCTTTGCAAGCGTCTCTTAGTGCCGATGAGCTTGGCTTGCTCATATTTGAAGGTATTCATATGACTTTAGGTTCTTTGGTCAGTAAACACGCTGAT GAAGAGTTTAGGGATGCCGTTCTGAAGGTTCCTTACAGAGGAAATTTTTGTCTTGAAATACATAATTTATCTCTTCTGAGTAGACTGTGCTTGATCAGAG GGATTCTCACTGCTGTCTCGAGAACAGTACTCAATAGGCGGTTTGTCGTGAAAACCAGTGATGCAGATCAACTTGTGGGAAATGAAAACTCCGGTACATC TGTTAAGACCATCTTGTATGATGGGATCTTGTCGGAGCTTTGTAACTACTGTGAGAACCCTACAGACAGCCATTTTAATTTCCATGCGCTGACAGTGATG CAAATTTGTTTGCAGCAGATGAAGACTTCAATATTGAGTTGTCTTACTGAACTATTGGACGGCTACAATCCAATTCCAGAGGAAGTGGAGACTCGAATAC TCAGGATAATCTGGAATAACTTGGAAGATCCCTTGAGTCAGACAGTAAAACAAGTACACCTAACGTTCGATCTTTTCATAGATATTCAATCAACGCTTCA TTCGGGAGAGGATAGCAAGCGAATCAAGCTGTTTCTTCAAAATATTGCATTGCATCTCCTACATATGGGTCCCCGTTGTAAGGGAAGATATGCTCCATTG GCTTCACTGACTAAGAGACTGGGATCACGAGCTTTACTGGATATGAATCCTGACTTGATGTATGAAACAGCACAAGCATATATAGACGATGATGTGTGCT GTGCTGTGACATCTTTCTTAAAATGTTTTCTTGAAAATTTGAGGGATGAATGTTGGAGCAATCATGGTGTCGAGACAGGCTATGAAATTTATAGGAGATA TTCGTTGCCGCCATTTCTTTGTGGTCTAGCATCCGGGATATCAAAGCTTCGGTCAAATCTGAACACTTATGCCCTGCCTGTTCTACTTGAAGTTGACGTG GATAGCATATTTCCTATGCTTTCTTTTATCTCAATCGGGCCAGACAGCAAGGAAAATGGACTTTCACCTCCGAAGCTTGCTGTTCAAGATTTAGAACTAG GAATCGAAGAACATGTGGCTGTCTTAATCTCTTTGCTTAAGGTATCCCGTTCTGTTGCATTGCTGGATGGAGATATTGATTTGTCTGATGATTCCGGTGC TGTTCCACTAGATAGCGAAAAGGGAGCAGAAATTGTGAATTCTAGTGGTATTGTATGCATAAAAGGGGTCATGTTTAAGGTCCCTGTTGAGTGGCTAGTG ATGGCTTTGACTAATGTTGACGAGTCACTTCGAGTGGATGCAGCCGAGACTCTTTTTTTGAATCCTAAGACATCTAGTCTTCCTTCTCTTTTGGAACTCT CTCTCCTTAAAGAAGCCGTGCCATTGAACATGAGGAGTTGCTCAACAGGTTTCCAGATGAAGTGGTCAAGCTTGTTCAGAAAGTTCTTTTCTCGGGTCCA TACCGCATTGGAGAGACAATTTAAGCAGGGTCACTGGAAACCATCAGCTAATTGCAAATTAAACGAACCATGTTCAAATGGCAAAGCTGAAGTTAAAAGG GCAGAGGATCTTTTTAATTTTATGAGATGGTTGGGCTGTTTTCTATTTTACTCGTGCTATCCTTCTGCCCCTTACAGAAGAAAAATAATGGCCATGGAGC TGATACAGATTATGCTCAATGTATGGTCTATCAAATCTTCTCAGGATGAGTGTGAAAACTACCTCTCTCCCTACAGTAAGGCTATCACTTCACCTGATTC AACCTTGTTGTTAGTTGGATCTGTCATTGATAGTTGGGATAGGCTGAGAGAAAGTTCTTTCCGTATTTTGCTTCATTTCCCTACTCCACTTCCTGGAGTT GATTCTGCAGAAATGGTCCAAAAACTAATAGTTTGGGCCCAGAGATTAGTTTGCAGTCCACGAGTGAGAGAAAGTGATGCAGGTTCACTAACTCTAAGGC TTATATTTCAAAAGTATGTCTTAGAACTTGGATGGGTTGTTCGAGCTTCTGTTAATGTTGTTTGTCTTGAGTCACCATATCAAGTATCCAATGCGATGGT CCAGATGGTTGAAACTACAACTCCTGTTGTAGAGTATGTCAAATCATTGATTGATTGGTTGAAAGTTGCTGTGGAAGAAGGGGAGAAGGATCTCTATGAA GCTTGTAAGAGCAGTTTTGTTCATGGAATCTTGCTTGCATTGCGGTATACTTTTGAGGAACTGGATTGGAATTCTAATGCAGTCATGTCTAATGGCTTAG AGATGAGGTCTGGATTGGAGAAGCTCTTGGATCTGGTTATGCGAATCACGCGCTTGGCACTTGGGGTGGTATCTGCTGATGCCTGGTATCTGCCTGATGG GGATGAATTAGTTGATGAAGATGCGTACTTGGTGAGTGAAATGGATATGGGAGAACTCTCATCTGAACAAGGCGTCGATTCAAAATCTCAGGATGAAAGC AGGATGTCTCAGCAGATTGTTATGGTTGGATGCTGGCTGGCAATGAAAGAGGTGAGTCTTCTTCTTGGGACTGTCATAAGAAAAGTCCCTTTACCTACAA ACAGTTGCCCAGATCTACAGAAACTAGCCCAATTTCCAGATGCTTTGAACCTTGGAAAATCCAATGCTATTCTTGATATTGAACGGCTTGAGCAAATGGG CAACCACTTCTTGGAAGTCCTCCTGAAGATGAAGCATAATGGAGCAATTGACAAGACAAGGGCTGGATTTACTGCTCTTTGCAACCGTCTGCTCTGCTCT AATGATCCAGAGTTGACAGAGTTATGGATGGAACAACTTATGGAAAGAACTGTGGTGAAGGGACAGACTGTGGATGATCTTTTAAGGAGAAGCGCTGGGA TACCTGCAGCCTTTATTGCCCTTTTCCTTTCAGAACCAGAAGGTTCACCAAAGAAGCTTCTCCCACGGGCTCTACGATGGCTAATTGATGTTGCTAATGG CTCTTTGCTAAGAGTAAATGTTGCAGATTCCAGCAGGTTTTCATCCTCAAGTTCAGATCAAGACCCTGATTCGTTGCTTCAAAATGAGACCAGTGTGATG GAAAAGGCCTCAAAAGTCCGAGATGAGGGTGTAGTTCCAACTGTGCATGCATTTAATGCTCTTAGAGCTGCTTTCAACGATACAAATTTGGCTACTGATA CATCCGGGTTTGCTGCAGAGGCTTTAGTTGTTTCAGTTAGTTCTTTTTCTTCTCCATACTGGGAGATAAGGAATGCAGCATGTTTAGCATATACTGCCTT ACTACGGCGTATGGTTGGATTCTTAAATGTCCTGAAAAGAGAGTCTGCACGCCGTGCCTTAACTGGCCTGGAGTTTTTTCACCGGTACCCTTTACTACAT CCATTTTTTTACAAGGAACTAAAAGTTGCAACTGATCTGCTTGAAGATACCAAGCCCGGGCATTCAGGATTGAACCTGGAAAAAGTTGTCCATCCAAGCT TGTGTCCTATGTTAATTCTTCTATCAAGGCTCAAACCTTCGGCTATTTCAAGTGAGAAGGGTGACAATCTGGATCCTTTCTTGTTTATGCCATTCATCAG GAAATGCTCCACCCAAAGCAATCTGCGAGTCCGTGTTCTTGCCGCGAAAGCTTTAAATGGGCTAGTATCTAATGAAAAACTTGCACCTACCGTCCTGCTT ATTGCTTCTGAGCTACCATTCTCAGCGAGTCAAGTCAGAACTACTTCTTCGGCAAGCATGATAAATGCAACTGATGACGTCCATTGTGCTTCTTTCAATT CAATACACGGGATGTTATTGCAAATCAGTTCTCTTCTTGATGCGAATTGCAGAGATTTGGCTGATTTTGGTAAGAGAGAACAAATTCTTGGTGATTTGTT ACAGATTCTTGTGGAACGCTCATGGATTGCTTGCCGTAAACAGTGCTCTTGCCCCATTTTGAATACATCTTTCCTTAGGGTGGTGACTCACATGCTCAGT ATTGCCAGAACAGGGTATGTCAGTGTTCATTTTCATATGATCCGCAAGCTGCTGGTGGAGTTATCTACAGGATGTTTAGATGTCGAAGATTCATATGGAA TGATGTTTGATGATCCAACGGTAGCTGAGCTTCGTGAACAAGCAACAATCTCTTATTTCAGCTGTATTCTTCAGACATCTAAAGATGAAACTGAAGGCTT TATTAAGGCACCAAAAAGGTCTTCATTGCCTGTAGTAAATTCGCTGAACCTTCCAGAAACAGAGGCCACCATTATAGGACTCCAAGAAAGACTGACTCTT TCCCTGGAAGATTCTGCATATGAAGTTCGACTTGCAACACTGAAATGGTTGCTAAAGTTCCTAAGGTCAACCGAGTACAGCTCCTCCGGTGCTCATAATA TTTTATCCGAAGAGATAAAAACAATTCAGCAGTGGACTAGATCAAGCCTTCAGACAACCATGATGAACCTTATAGACTCTGAGAAGAACAACAGATGTAT ATACTACATCCTCAGGGTTATTTTCACCTGGAACATGCTACTGTTTAAGGAGACAAGGGACCAAGATGTTATTAGCACTGAATATATTGGTCAATTGGAT CTCTGCTGTGTATCCGAATTTTGGGATAAATTGTTGTCCTTATACAAGGTCACAAGACATTCAAAGACAAGAGAGAAACTCATCTGTTGCATGGCTGTAT GTGTGAAACGGTTTGCCAGTTTACTGACGAGCTTTGCTCTTTCCGGTGAGCAGAAGAAAATTATAGAATCCACCAAACCAAATCGATTGGAGGACCCAGC ATATTTGATTGAATGCATTACCTTTTATGTTGGGTTGATCAAGGAGCATGGTTCATCATCTGAACCAGTAAAAATGCGAATGGCTGTAGCTGAATCTGTA ATAGCTTCGGGTTTGCTAGAACAAGCTGAATTGATTGGTTCATCTGTATCCAACTCCAAAGTACCATCTGATTGTCTAGGTGCCACGTATGCACTTCAAA TTCTAGAGACATGGTTTGCTAGCATCAAATTGCTGGAGGATGAAGACGATGGGATCAGAGAAGAAGTTGCCAGAAATGTCCAGAAATTCTTTCATCGCAA GGTGGATGGAAGTGGTTCTCATGCTAGTGGAGTCGCAACAACCCAAGTAGAGAGAGTTATTGAATTAAGTTTTTGGCATCTGTCTTTGATCTTTGGTCAC TGGATTTCTTACTTAGATTACCTTACACAGTGGGTGTTTGACATAGCAACCTCGGTGGTTTCGACAAGGGATCTTGTGAGAAGAGTTTTTGACAAGGAGA TTGATAACCATCACGAAGAGAAGTTGTTGATCTGTCAGATTTGTTGCTTCCATTTGGAGAAGCTTTCAGTTTTAAACTCATCATCTGCTCAAAATGCCAA CAACCATGAGTTTACGAATTACTTATACTCAAGGAGAAGAAAATTTGCTGAGCAGCTGAAGTCATATGCTGATGACTTTGTTGAAAAACTCGGAGGAATT GACTGGATAGGAGGTGCAGGTAACCACAGGGATGCTTTCCTACCAGTATATGCAAACTTGCTTGGGTTTTATGCGCTATCAAACTGCATCTTGAAGGGAG AAGGCGTAGTTAGGAGTCTATTAGTTGATGTCGATGATCTCGGGAAAACGATCAACCTTTTCTTCAGTAACCCATTGATCTATAATCTATTTTCTCTAGT AGTGAAGTCGCATGAGAAGAAGGGTGCAATCTCTTCATGTAAAGTGATAGAAGATGCACTAAATGATGGTTTTAGTCCATATTTTCTTCTTAGGTGA
AA sequence Show only first row Show all	>Lus10015366 pacid=23160943 polypeptide=Lus10015366 locus=Lus10015366.g ID=Lus10015366.BGIv1.0 annot-version=v1.0 MSAKWRALQHRHRYTYSAVIFPHSYADILSHSLLASNPKCSAFVEDLNKLVSLNSIYTQIAHVKSLASSFSNLVRDIETDDSLLELACRFYLEVLFMENS PPLHRTLVSGLARVGNAERQSLIHKCFAELCKGYGSDKGKGSLKKRFCLSKVALSFMGMPKLGYLVDIIEDCVVLVAWDVVIGLESVVSETEKLARPSPI VLEQCQDALSCLYYLLQRFPDKLNHSNHVDADDNLSVLERVFKVLISVLKSLAFTRDCLVAAGVSLCAALQASLSADELGLLIFEGIHMTLGSLVSKHAD EEFRDAVLKVPYRGNFCLEIHNLSLLSRLCLIRGILTAVSRTVLNRRFVVKTSDADQLVGNENSGTSVKTILYDGILSELCNYCENPTDSHFNFHALTVM QICLQQMKTSILSCLTELLDGYNPIPEEVETRILRIIWNNLEDPLSQTVKQVHLTFDLFIDIQSTLHSGEDSKRIKLFLQNIALHLLHMGPRCKGRYAPL ASLTKRLGSRALLDMNPDLMYETAQAYIDDDVCCAVTSFLKCFLENLRDECWSNHGVETGYEIYRRYSLPPFLCGLASGISKLRSNLNTYALPVLLEVDV DSIFPMLSFISIGPDSKENGLSPPKLAVQDLELGIEEHVAVLISLLKVSRSVALLDGDIDLSDDSGAVPLDSEKGAEIVNSSGIVCIKGVMFKVPVEWLV MALTNVDESLRVDAAETLFLNPKTSSLPSLLELSLLKEAVPLNMRSCSTGFQMKWSSLFRKFFSRVHTALERQFKQGHWKPSANCKLNEPCSNGKAEVKR AEDLFNFMRWLGCFLFYSCYPSAPYRRKIMAMELIQIMLNVWSIKSSQDECENYLSPYSKAITSPDSTLLLVGSVIDSWDRLRESSFRILLHFPTPLPGV DSAEMVQKLIVWAQRLVCSPRVRESDAGSLTLRLIFQKYVLELGWVVRASVNVVCLESPYQVSNAMVQMVETTTPVVEYVKSLIDWLKVAVEEGEKDLYE ACKSSFVHGILLALRYTFEELDWNSNAVMSNGLEMRSGLEKLLDLVMRITRLALGVVSADAWYLPDGDELVDEDAYLVSEMDMGELSSEQGVDSKSQDES RMSQQIVMVGCWLAMKEVSLLLGTVIRKVPLPTNSCPDLQKLAQFPDALNLGKSNAILDIERLEQMGNHFLEVLLKMKHNGAIDKTRAGFTALCNRLLCS NDPELTELWMEQLMERTVVKGQTVDDLLRRSAGIPAAFIALFLSEPEGSPKKLLPRALRWLIDVANGSLLRVNVADSSRFSSSSSDQDPDSLLQNETSVM EKASKVRDEGVVPTVHAFNALRAAFNDTNLATDTSGFAAEALVVSVSSFSSPYWEIRNAACLAYTALLRRMVGFLNVLKRESARRALTGLEFFHRYPLLH PFFYKELKVATDLLEDTKPGHSGLNLEKVVHPSLCPMLILLSRLKPSAISSEKGDNLDPFLFMPFIRKCSTQSNLRVRVLAAKALNGLVSNEKLAPTVLL IASELPFSASQVRTTSSASMINATDDVHCASFNSIHGMLLQISSLLDANCRDLADFGKREQILGDLLQILVERSWIACRKQCSCPILNTSFLRVVTHMLS IARTGYVSVHFHMIRKLLVELSTGCLDVEDSYGMMFDDPTVAELREQATISYFSCILQTSKDETEGFIKAPKRSSLPVVNSLNLPETEATIIGLQERLTL SLEDSAYEVRLATLKWLLKFLRSTEYSSSGAHNILSEEIKTIQQWTRSSLQTTMMNLIDSEKNNRCIYYILRVIFTWNMLLFKETRDQDVISTEYIGQLD LCCVSEFWDKLLSLYKVTRHSKTREKLICCMAVCVKRFASLLTSFALSGEQKKIIESTKPNRLEDPAYLIECITFYVGLIKEHGSSSEPVKMRMAVAESV IASGLLEQAELIGSSVSNSKVPSDCLGATYALQILETWFASIKLLEDEDDGIREEVARNVQKFFHRKVDGSGSHASGVATTQVERVIELSFWHLSLIFGH WISYLDYLTQWVFDIATSVVSTRDLVRRVFDKEIDNHHEEKLLICQICCFHLEKLSVLNSSSAQNANNHEFTNYLYSRRRKFAEQLKSYADDFVEKLGGI DWIGGAGNHRDAFLPVYANLLGFYALSNCILKGEGVVRSLLVDVDDLGKTINLFFSNPLIYNLFSLVVKSHEKKGAISSCKVIEDALNDGFSPYFLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55160			unknown protein		Lus10015366 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	2.0	0.9653
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	2.0	0.9663
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	2.4	0.9668
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	4.6	0.9656
AT4G30150			unknown protein		Lus10012174 [exp]	4.9	0.9505
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	4.9	0.9588
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	6.3	0.9520
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	6.3	0.9590
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	7.2	0.9491
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	7.3	0.9452

Compare expression of checked genes

Lus10015366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.