Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 285 / 2e-93 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 266 / 3e-87 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 219 / 1e-69 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 184 / 5e-56 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G02450 186 / 8e-56 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT3G15510 179 / 3e-53 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G04070 176 / 2e-52 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G01720 173 / 9e-52 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G61110 174 / 1e-51 NAC ANAC025 NAC domain containing protein 25 (.1) AT4G27410 172 / 2e-51 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007263 [exp] 535 / 0 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10036749 [exp] 288 / 2e-94 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 288 / 4e-94 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10030478 [exp] 278 / 6e-91 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031189 [exp] 221 / 3e-69 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 213 / 4e-68 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10007410 [exp] 189 / 4e-57 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10038332 [exp] 186 / 6e-57 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10036117 [exp] 187 / 2e-56 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 306 / 4e-102 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 305 / 1e-101 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G066300 [exp] 221 / 4e-70 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G098000 [exp] 218 / 7e-69 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 214 / 2e-67 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 211 / 3e-66 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 206 / 2e-64 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 204 / 8e-64 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.004G038000 [exp] 188 / 8e-57 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 188 / 8e-57 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10015367 pacid=23160929 polypeptide=Lus10015367 locus=Lus10015367.g ID=Lus10015367.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAAGGTGAGGTGGAGGAGGAGATGCTACCTGGTTTCCGTTTTCACCCGACTGACGAGGAGTTGGTTGGGTTTTACCTGAGGAGGAAAATAC AGCACCGTACTCTTTCTATTGAACTCATCAAGCAGGTTGATATTTACAAATACGATCCCTGGGATCTTCCAAAGCTGGCGACAACAGGGGAGAAAGAGTG GTATTTCTACTGTCCAAGAGACCGTAAATACAGGAACAGCGCCAGGCCGAACCGGGTTACCGGAGCCGGTTTCTGGAAGGCAACCGGAACAGACCGGCCT ATATATTCATCGGAAGGAAGCAAATGCATAGGGTTGAAGAAATCACTGGTTTTTTACAGAGGACGAGCTGCAAAAGGCATCAAAACCGACTGGATGATGC ATGAGTTCCGTCTCCCTCCTCTTCCTGACCGTTCCCCTTCCCCACCTCATCCTCCTCCTAAGAAGCTCCTCCTCGACAAAACCCTTCCTCCCAATGAAAC TTGGGCGATTTGCCGGATATTCAAGAAGACCAATTCAATGGCTCAAAGAGCTCTTTCCCATCCATGGATGTCGTCCCCTATGCTTCCTCCTGCTGACAAC TCCTCCCATATATTCAACCACAACCCTTCACAACTTGGATCATCACTTGTCTTCCAGCAACAACCCATGTTTCCATTCCCAGCTTGTGCCACTAACAACA ATTTCATCTTCCCTCCAATCGGCTCTTCAATTCCACCCAAGACGACCCTGATTTCGGATCCTACTACTTCTGAATCTCTAGAATTCAGTGGATTCTCTAT CCGTAATTTGCAACATAGCTTGGAAAGTAGTGCTGACCAGGGAGACGATTTGAGGAAGAACAACAATATTAATCAGTGGGATGGGATTGGGAATGGGAAT GGGATGAGGTCGTCGTCAATTGGATTTCCATTCAGTTTGCCAACAGATGATGATGTTTGGGATACGGTGGTGCATCCAGCTGGTGACATGTCCAGTAACG CTGCTTGTTATTCCACAAACAAATGCTACACTTAA
AA sequence Show only first row Show all	>Lus10015367 pacid=23160929 polypeptide=Lus10015367 locus=Lus10015367.g ID=Lus10015367.BGIv1.0 annot-version=v1.0 MEEKGEVEEEMLPGFRFHPTDEELVGFYLRRKIQHRTLSIELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP IYSSEGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPPLPDRSPSPPHPPPKKLLLDKTLPPNETWAICRIFKKTNSMAQRALSHPWMSSPMLPPADN SSHIFNHNPSQLGSSLVFQQQPMFPFPACATNNNFIFPPIGSSIPPKTTLISDPTTSESLEFSGFSIRNLQHSLESSADQGDDLRKNNNINQWDGIGNGN GMRSSSIGFPFSLPTDDDVWDTVVHPAGDMSSNAACYSTNKCYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10015367 [exp]	0	1
					Lus10033739 [exp]	8.0	0.8716
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	11.9	0.8923
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	14.0	0.9009
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	14.1	0.8697
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	15.5	0.9039
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	21.1	0.8847
AT5G26250			Major facilitator superfamily ...		Lus10002452 [exp]	24.5	0.8477
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	28.4	0.8856
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	35.8	0.8222
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	36.1	0.8220

Compare expression of checked genes

Lus10015367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.