Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 435 / 4e-144 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 268 / 3e-80 Protein of unknown function (DUF1666) (.1) AT3G20260 136 / 2e-34 Protein of unknown function (DUF1666) (.1) AT1G73850 94 / 9e-20 Protein of unknown function (DUF1666) (.1) AT3G01175 80 / 9e-16 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007264 [exp] 1098 / 0 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 328 / 3e-102 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 328 / 3e-102 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10034809 [exp] 123 / 1e-29 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 111 / 6e-26 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 94 / 1e-19 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 93 / 3e-19 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082300 [exp] 548 / 0 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 161 / 5e-42 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 131 / 1e-32 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 113 / 6e-26 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 100 / 1e-21 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1) Potri.004G126800 [exp] 76 / 5e-14 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10015368 pacid=23160918 polypeptide=Lus10015368 locus=Lus10015368.g ID=Lus10015368.BGIv1.0 annot-version=v1.0 ATGGCTTATGTCTCCCGAAAATTGCTTCCCTTCGCTGCCGCTTTCTGGGTTTCCTTCTCCACTCTGTTCCTTGCTCTGTTTCGCTTCCTCACTGGAACCC CCAATTTCAGAGTGGAAACCGGTGTTTTTATAGCTAAAGGCTCCAACTTTATTGAACCGGAGATTCCTGAAACAGACAAGGAGACGGCGTCGCCGGATGT TTCCGAGTATGAAGCCCTGGAGGAGGAGGAGGAGCAGGAGGAGGAAAAGGAGGAGGAGCATAATAATTTGGAGGATCAGAAACCCAAATTCGTTTTCAAA TTCGATTATCAGACTTACAGAGAAGACCAGATTGAGAACGATTTACCCTCTTCAAGTGCAAATAAGTACGAATTCTTCCTTGGAGAGGACATGTGTTATT CCATCGATGATCCGGGTGCCGTTCGCCTCACCGTGAAAGAATGCTTTGCCGATTCCGGCGAAGGTTTTGCTGATAGGGTTTCTGGAGACGTGGTTAAGGA CGTTGAGGAAGAGGTAGCTTTTGCAGAATCTCATGTTGAAAGGCTTGAAGAGATGTCTACGGAGGAGGAGGAGACGAAGCTGAATGAGGCAGAATTTTTT GTTCAAGACCCTTCAATCGTCAAAGGGAAGGAGCCAGTTGATGCTGTGTTTCCATCAGAAGAATCAATGGCGTCTGATTACGATGGATCCGAGTCGATTG TTTCGACTCATTCAACCTGCCATGGATTATTGTCGGATTATGATTCTGGAGAAGATGGTTTGAACAGTTTTATCAACAGCTTGAATTCTATATACGGGGC TGATGATTTTGACGATGAAGAAGATAGTAGTAATAATACCATGGAAGAGCTGCAAAAGGAAGTGGGTTCCGAGGAGGCAAATGATCCAAAGAATAGTAAA GATGATTATGTTCATTCCAAATCAGGTGCTTGGGATTCGCAGGATGGTAATAATGGATTAGAAGTGTTGTGGGAGCACCAAGACTTGATAGAGCAGATGC AAATGGAGCTGAAAAAAGCCAAGGCAACCGGTCTTCCAACGATACTGGAAGATGATGAGTGTCCTAAGATAGTAATTGAAGATTTGAAGCCATGGAAGAT CGAAGATAAGTTTCATCATGAAGATAAGATGACTGAGCTTCACAGGTTCTACAAGAGTTACAGAAACAGAATGCGCAAATTTGATATATTGAACTACCAG AAGACGTATGCTACAAGCTTTCTGCAATCCATGGACCCACTCGAGTCCATGTCATCAACACAGAAAAGTGAGGCTCCAGCTTTGACATCCCTTTTCTCTC AGAAACTGATGTTACTCAAGCGTAAAAACTCAAGTTTTTATCCAATGGAAAACTTTATCAAGGAATTGCAGAGTGCTTTGGAAACAGTCTATGTCGGTCA AATGTGCCTCTCTTGGGAAATCCTTTATTGGCAGTACCAGAAAGCACTAGAGCTCTACGATTCTGACCATTTCGGCAGAAGAACATACAATGAAGTTGCT GGCGAATTCCAGCAGTTCCAAGTTTTGTTGCAAAGGTTCATAGAGAACGAGCCTTTTGAAGGTCCAAGGTTGCAGAACTACGTTAAGAAGCGTGTTGTTA TGCGCAATTTGCTTCAGGTTCCCATCATTAGAGGCAAGAGAAAATCTTCACCTTTTTTTCATGAGGACGATGGCACTAAGGATAAGAAACCAAGAAGAAG AGGAAATGATGTGGGCACAATTACAAGCGAGGAGCTGGTAGAGATCATGGAAGAATCGATCAGAATAATGTGGAGATTCATTCGAACGGATAAAGATGCA AACACCAGAACTCTCAAGCTCCCGAAGAAAGGAACTCAAATGCAACCTGGTGAAGATCCTTATAGACTTGAGCTGCTCACAGAAGTCCACTCCAGTCTCC AAAAGAAGGAGAAAAGGGTGAAGGAGATGGTGCGGAGTGGGAGTTGCATTCTGAGGAAATTTCAGAAGAAGCAGCAAAAAGAAGAAGAAAGTTCATCATC AGCAGCAGAAAATAATGTTGTATGCTTCTTCTCTCAAGTGGACATGAAGTTGGTTGCTAGAGTGCTCAGTATGTCCAATATAACAACGGAGCAGTTAGTT TGGTGTCGGAGTAAGTTGAGGCAGATCAATTTTGTAGGCAAGAGGATTCATGTAGAGCCTTCTCTTTCACTTTTCCCTTGCTAG
AA sequence Show only first row Show all	>Lus10015368 pacid=23160918 polypeptide=Lus10015368 locus=Lus10015368.g ID=Lus10015368.BGIv1.0 annot-version=v1.0 MAYVSRKLLPFAAAFWVSFSTLFLALFRFLTGTPNFRVETGVFIAKGSNFIEPEIPETDKETASPDVSEYEALEEEEEQEEEKEEEHNNLEDQKPKFVFK FDYQTYREDQIENDLPSSSANKYEFFLGEDMCYSIDDPGAVRLTVKECFADSGEGFADRVSGDVVKDVEEEVAFAESHVERLEEMSTEEEETKLNEAEFF VQDPSIVKGKEPVDAVFPSEESMASDYDGSESIVSTHSTCHGLLSDYDSGEDGLNSFINSLNSIYGADDFDDEEDSSNNTMEELQKEVGSEEANDPKNSK DDYVHSKSGAWDSQDGNNGLEVLWEHQDLIEQMQMELKKAKATGLPTILEDDECPKIVIEDLKPWKIEDKFHHEDKMTELHRFYKSYRNRMRKFDILNYQ KTYATSFLQSMDPLESMSSTQKSEAPALTSLFSQKLMLLKRKNSSFYPMENFIKELQSALETVYVGQMCLSWEILYWQYQKALELYDSDHFGRRTYNEVA GEFQQFQVLLQRFIENEPFEGPRLQNYVKKRVVMRNLLQVPIIRGKRKSSPFFHEDDGTKDKKPRRRGNDVGTITSEELVEIMEESIRIMWRFIRTDKDA NTRTLKLPKKGTQMQPGEDPYRLELLTEVHSSLQKKEKRVKEMVRSGSCILRKFQKKQQKEEESSSSAAENNVVCFFSQVDMKLVARVLSMSNITTEQLV WCRSKLRQINFVGKRIHVEPSLSLFPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	0	1
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	1.4	0.8565
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	2.0	0.8586
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	3.5	0.8238
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	4.5	0.8398
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	5.7	0.8240
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	7.1	0.8257
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	8.5	0.7882
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	11.2	0.8387
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	12.0	0.8277
					Lus10036593 [exp]	15.1	0.8378

Compare expression of checked genes

Lus10015368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.