Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28917 96 / 4e-27 ZF_HD MIF2 mini zinc finger 2 (.1) AT1G18835 91 / 2e-25 ZF_HD MIF3 mini zinc finger 3, mini zinc finger (.1) AT1G74660 89 / 3e-24 ZF_HD MIF1 mini zinc finger 1 (.1) AT2G02540 78 / 2e-18 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT5G15210 76 / 7e-18 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT4G24660 75 / 8e-18 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT3G28920 75 / 3e-17 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT2G18350 72 / 1e-16 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G69600 72 / 2e-16 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT1G14440 72 / 5e-16 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033016 [exp] 166 / 1e-54 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10036753 [exp] 77 / 1e-18 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005242 [exp] 77 / 8e-18 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10007147 [exp] 73 / 2e-16 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010694 [exp] 73 / 2e-16 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 71 / 1e-15 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 64 / 2e-13 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 64 / 2e-13 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 61 / 2e-12 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126600 [exp] 93 / 1e-25 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.004G126500 [exp] 83 / 4e-20 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 81 / 2e-19 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.010G169400 [exp] 79 / 9e-19 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.002G102900 [exp] 78 / 1e-18 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 76 / 6e-18 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G158800 [exp] 76 / 9e-18 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.019G081300 [exp] 75 / 2e-17 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 72 / 2e-16 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.013G048466 [exp] 70 / 2e-16 AT2G02540 82 / 6e-19 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10015370 pacid=23160927 polypeptide=Lus10015370 locus=Lus10015370.g ID=Lus10015370.BGIv1.0 annot-version=v1.0 ATGAGGAAGAGGCAAGTTGTTGTGAGAAGGCGATCGTCGGAATTAGAGGGTTCAAGGAACAACGGTAGAGAGGCGGCGGGCAACCCGGGGACAGCGATTA GGTACGGAGAGTGCCAGAGGAACCACGCCGCCATCGTGGGAGGGTTTGCTGTTGATGGGTGCAGGGAGTTCATGGCAAGTAGCCTTGACCAAGCAACTCC TCTTGCACTCACTTGTGCTGCTTGTGGCTGCCACCGCAACTTCCACAGAAGAGAGTCTCAGGACGAAGATGCTATCTCTCATTATTCTTCCCCGACGTCC AGTGCCACTAATTAA
AA sequence Show only first row Show all	>Lus10015370 pacid=23160927 polypeptide=Lus10015370 locus=Lus10015370.g ID=Lus10015370.BGIv1.0 annot-version=v1.0 MRKRQVVVRRRSSELEGSRNNGREAAGNPGTAIRYGECQRNHAAIVGGFAVDGCREFMASSLDQATPLALTCAACGCHRNFHRRESQDEDAISHYSSPTS SATN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	0	1
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	1.0	0.9191
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	3.2	0.9104
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	3.2	0.9186
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	3.5	0.9162
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	6.6	0.9109
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	6.9	0.9004
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10021587 [exp]	7.1	0.8622
AT5G02420			unknown protein		Lus10037925 [exp]	8.7	0.8683
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10033016 [exp]	9.4	0.8865
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	9.9	0.9013

Compare expression of checked genes

Lus10015370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.