Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01180 888 / 0 ATSS2 starch synthase 2 (.1) AT5G24300 442 / 3e-146 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 321 / 5e-100 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 209 / 1e-56 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 196 / 5e-52 ATSS3 starch synthase 3 (.1.2) AT5G01220 50 / 4e-06 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033014 [exp] 1421 / 0 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10022398 [exp] 452 / 4e-150 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 452 / 1e-149 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10008279 [exp] 350 / 4e-111 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 347 / 8e-110 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10023319 [exp] 209 / 2e-56 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 208 / 4e-56 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 199 / 5e-53 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 197 / 2e-52 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084100 [exp] 982 / 0 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 461 / 2e-153 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 351 / 4e-111 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 335 / 3e-105 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 208 / 3e-56 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 191 / 7e-52 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 184 / 5e-48 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 77 / 2e-14 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 51 / 2e-06 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.006G097600 [exp] 51 / 3e-06 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10015371 pacid=23160866 polypeptide=Lus10015371 locus=Lus10015371.g ID=Lus10015371.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCTGGGCCCTTCCCTTCTCTCACTGAAGTTAGAGTTGAGACTTGTGCTCTTTTCCGCTGTAAGAAGAACCAAAACGGCCCAAAGATTCCCT TCTTCTGCTGCAGGCTGAACAAAACCCCTACCAATTTAGGACTTGCAGGAGGTGATAGGCTTTCGCCTAGGTTTAAGGGTCTCAGAGCTACCGGCAAAGA CGCAGAGAAGAATGGTGATCAGTCGGATGATGCACTTCAGGCCACAATCGAGAAGAGCAAGAAGGTTCTTGCTGTGCAAAGAGACTTACTTCAGCAGATC GCTGAAAGAAGGAAATTGGTCTCTTCAATAAATGAAAATAATCTTAACCCAGAAGCAAATGATGAATCCCTCCTTACAAATGTGGAACCTACTTCAGCTA GTGCTAAGGATGCTTCAAGTCTGGATGATGAATTAGCAACCACAATAAGCGGGAATGAAGATAGTCAGCATAGGAAAAATCCTCGTCCATCTGGAGGATT CTCAACAGAAAATGGTACAGTCCAGCTAAATGAGCAAGCTTCAATCTTCTCCCAAGTTTTCACCACAAGCAATGTGAAGCGTGAAGATGTTAATGAATCC ACTTTACCAGAGATGAGTTCCAGTTTCGATGATAGTATGGCCCACGTGGATGATGATACTGTATCATTTCTCTCAACTTCATCCACCATTTCCACCATAA ACAACATGCAGACTGAATATGTCACTGAATCCTCACCACAAGCCACCAATGATGTTAAAGGTGATTCATATGTAGAAGATGCAACCCCGCCTCCTTTGGC CGGGCCCAATGTCATGAACGTTATTTTGGTTGCTGCAGAATGTGCACCGTGGTCTAAAACAGGTGGGCTTGGGGATGTTGCCGGTTCTTTACCAAAGGCT TTGGCACGCCGTGGGCATAGGGTTATGGTTGTTGCGCCTCGGTATGGTGCTTATCTGGAACCTGAGAACACTGGGATCAGAAAAATTTATAAGGTGGATG GTCAGGATTTAGAGATCACTTACTTTCAAGCCTACATCAACGGTGTGGACTTTGTTTTCATAGACGGCCCCTTGTTTCGCCACATAGAGAACAATATATA TGGAGGAAATCGGATGGTTCCTTGGCATGTTCCATGTGGTGGTGTATGTTACGGAGATGGAAATTTGGTTTTCATTGCCAATGATTGGCATACCGCGTTG CTGCCGGTTTATCTGAAAGCATACTACCGGGACAATGGGTTTATGCAATTCACAAGATCGGTTCTTGTGATTCACAACATCGCGCACCAGGGGCGGGGGC CAGTGGATGATTTCAAATATGTGGATCTGCCAGGAAGCTATATTGATCTTTTCAAATGGTATGATCCTGTTGGTGGAGAGCACTTTAACATATTCGCAGC TGGTCTGAAGGCAGCAGATAGAGTGGTAACTGTAAGTCATGGATATGCATGGGAGCTGAAAACACTGGAAGGAGGTTGGGGCCTGCATAGCATCATTAAT GAAAATGATTGGAAGTTGAGAGGCATCGTGAATGGAATCGACACCCAAGAGTGGAATCCTCAGAATGATGTTCACTTGACATCTGATGGTTATGCGAACT ACTCCCTGGAAACACTTGAGACTGGCAAGCCTAAATGCAAGGCAGCATTACAGAAGGAACTCGGTTTGCCAGAACGTCCAGATGTTCCCCTTATTGGTTT CATTGGAAGATTAGATAACCAGAAAGGTGTTGATCTAATAGCGGAGGCTATTCCATGGATGGTGGAGCAGGATGTGCAATTAGTCATGCTTGGTACAGGT AGGCAAGACCTGGAACAGATGCTTAGACAGTTTGAAAGTCAATATGGAGACAAAGTCAGGGGATGGGTTGGATTCTCAGTGAAGACAGCTCACAGGATTA CTGCTGGTGCAGATATTCTGCTGATGCCATCAAGGTTCGAGCCCTGCGGGTTGAACCAGCTATATGCAATGACTTATGGGACTATTCCTGTGGTGCATGC TGTTGGTGGTTTAAGAGATACAGTTGAGCCTTTCGATCCATTTAATGAGTCAGGGCTAGGGTGGACTTTTGACAGTGCTGAAGCAAGCAAGCTGATACAT GCATTAGGAAACTGCTTGTGGACCTACAGAGACTTTAAGCGGAGTTGGGCAGGACTGCAGAGACGAGGAATGGAGCAAGACTTGAGCTGGGACCATGCGG CCCAGTTGTACGAGGAGGTCCTTGTTGCTGCCAAGTATCAATGGTGA
AA sequence Show only first row Show all	>Lus10015371 pacid=23160866 polypeptide=Lus10015371 locus=Lus10015371.g ID=Lus10015371.BGIv1.0 annot-version=v1.0 MASAGPFPSLTEVRVETCALFRCKKNQNGPKIPFFCCRLNKTPTNLGLAGGDRLSPRFKGLRATGKDAEKNGDQSDDALQATIEKSKKVLAVQRDLLQQI AERRKLVSSINENNLNPEANDESLLTNVEPTSASAKDASSLDDELATTISGNEDSQHRKNPRPSGGFSTENGTVQLNEQASIFSQVFTTSNVKREDVNES TLPEMSSSFDDSMAHVDDDTVSFLSTSSTISTINNMQTEYVTESSPQATNDVKGDSYVEDATPPPLAGPNVMNVILVAAECAPWSKTGGLGDVAGSLPKA LARRGHRVMVVAPRYGAYLEPENTGIRKIYKVDGQDLEITYFQAYINGVDFVFIDGPLFRHIENNIYGGNRMVPWHVPCGGVCYGDGNLVFIANDWHTAL LPVYLKAYYRDNGFMQFTRSVLVIHNIAHQGRGPVDDFKYVDLPGSYIDLFKWYDPVGGEHFNIFAAGLKAADRVVTVSHGYAWELKTLEGGWGLHSIIN ENDWKLRGIVNGIDTQEWNPQNDVHLTSDGYANYSLETLETGKPKCKAALQKELGLPERPDVPLIGFIGRLDNQKGVDLIAEAIPWMVEQDVQLVMLGTG RQDLEQMLRQFESQYGDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMTYGTIPVVHAVGGLRDTVEPFDPFNESGLGWTFDSAEASKLIH ALGNCLWTYRDFKRSWAGLQRRGMEQDLSWDHAAQLYEEVLVAAKYQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10015371 [exp]	0	1
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	12.5	0.6878
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	15.4	0.7409
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	16.1	0.7111
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	16.7	0.6827
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	25.1	0.7147
AT3G27030			unknown protein		Lus10041551 [exp]	25.9	0.6926
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	26.5	0.6760
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	32.8	0.6484
AT3G52155			Phosphoglycerate mutase family...		Lus10023521 [exp]	44.7	0.6861
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	46.2	0.6299

Compare expression of checked genes

Lus10015371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.