Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67960 619 / 0 POD1 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033013 [exp] 577 / 0 AT1G67960 211 / 1e-61 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103400 [exp] 703 / 0 AT1G67960 640 / 0.0 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05346 [flax] [poplar] DUF747 Eukaryotic membrane protein family
Representative CDS sequence Show only first row Show all	>Lus10015372 pacid=23160850 polypeptide=Lus10015372 locus=Lus10015372.g ID=Lus10015372.BGIv1.0 annot-version=v1.0 ATGGCGTTGAGATCCTCCGGTAAAAAACTATCCTTTGAGATCCTCAGCAAAAGCAGCTCTTTGGAGGAAGACCAATTTCTGCTCCTCACCCAATCAATCC CCGACACCGTAAAATTGAATCCGACGACGAACAACATTTCGAAAAATCAGAAAAAGAAGAAGAAGAACAGGATCAAACACAAGAAATCCAGCCCCCACGC CACAATCATCGAAGATCCGTCTGCTGCGACAAGCATCGCTGGTTCCACTTCCAATTCCAATTCGGTGATCGATTCTCCAGTCTCCGGAACTGGAGAATTC CAAAATGGAGCTGCATCGTTTGTTGAGGATAGGTTTAGTAGTTACGGCGGCGGTAGAGGGGGGGGAAGCGTGGTTTTCACATCGATTCCACTTACCGATG TTGTGTGTGTGTACGACGACTCTATCACCAAAAATGACAACAACAATGGCGAGTTGAGGCAGAGGAATGTGAGTTTTGGCGGAACTATCGACGATGGGGA AGCAGATTATGAGAAGCAGGCTTCTGTATTGCGGGTGAATGGAGAAGGTTCGGTGGAGGACGATTTAGGAGTCAATTCTGCTGCAGAGAAGCAGCAAAAT ATGCCGAATGGCTGTGGTCTGCCTAGAAGATTGGAGACTGTGGAGTCACTAGATTGGAAGCAACTCATGGCCGATGATCCTACTTATCTTTTCTCAGTGG AGAAGTCGCCAGTTACATACTTGATGGATGAAATTGATGAAGGGAATTCATTAAGGCGAACCACAACTCTTGGTAGTGAGAAAGAAAGGGAGAGGGTGTA CGACACTATATTCCGCTTACCATGGAGATGTGAGCTGCTTATTGATGTTGGCTTCTTCGTGTGTTTGGATTCCTTCCTCTCATTGTTGACGGTCATGCCA GCAAGAATCCTGATGACTGTTTGGAAGCTTCTCACAAGGCAGTTCAAGAAGCCCTCTGCTGCAGAGTTGTCAGATTTTGGCTGCTTTATTATATTAGCTT CTGGAGTCATTCTCTTGGAACAAACAGATATCAGCTTAATATATCACATGATTCGTGGTCAAGGAACAATCAAACTGTATGTGGTTTACAATGTTTTGGA GATATTTGATAAACTATGCCAAAGTTTTGGGGCAGATGTATTTCAGACATTGTTCAATTCAGCTGAAGGTCTTGCTAGTTGCACACCAGAAAACATGAGA TTCTGGATTTGGAGATTTATTGCTGACCAGGCAATTACTTTATCAACATGCATTGTTGCTCACAATAATGCTTTGTTGGCTTTGTTGGTATCAAATAACT TCTCCGAGATTAAAAGCAGCGTCTTTAAGCGTTTCAGCAAGGAAAACATTCATAGTCTTGTATACTCTGATTCAGTGGAAAGGTTCCACATTACAGCATT TCTACTGTTCGTTTTGGCTCAAAACATCCTGGAGGCAGAGGGTCCATGGTTTGAGAGTTTTCTTTATAATGCGCTCTTGGTTTTCGTATGCGAAATGTTG ATCGATATCATAAAACACTCATTCCTTGCAAAATTCAATGACATAAAACCCATCGCCTACTCTGAATTCTTGGAAGACCTGTGTAATCAGACTCTGAAGA TTCAATCCGCGGACAAAGACAAAATCCTGAGTTTTATACCTCTGGCACCGGCATGCGTGGTCATCCGAGTCGTTACTCCTGTATATGCTGCTCGCCTTCC GTACAGTCCACTCCCTTGGAGGATCTTCTGGATATTCCTATTGTCGTCTATGACCTTTGTGATGCTCATGAGCCTGAAGATAATGATCGGTATGGGACTG CAAAAGCATGCCTCGTGGTATGTAAACAGGTGCCGCAAACGGAAACACCATCTCCACTCTGATTAA
AA sequence Show only first row Show all	>Lus10015372 pacid=23160850 polypeptide=Lus10015372 locus=Lus10015372.g ID=Lus10015372.BGIv1.0 annot-version=v1.0 MALRSSGKKLSFEILSKSSSLEEDQFLLLTQSIPDTVKLNPTTNNISKNQKKKKKNRIKHKKSSPHATIIEDPSAATSIAGSTSNSNSVIDSPVSGTGEF QNGAASFVEDRFSSYGGGRGGGSVVFTSIPLTDVVCVYDDSITKNDNNNGELRQRNVSFGGTIDDGEADYEKQASVLRVNGEGSVEDDLGVNSAAEKQQN MPNGCGLPRRLETVESLDWKQLMADDPTYLFSVEKSPVTYLMDEIDEGNSLRRTTTLGSEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSLLTVMP ARILMTVWKLLTRQFKKPSAAELSDFGCFIILASGVILLEQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFGADVFQTLFNSAEGLASCTPENMR FWIWRFIADQAITLSTCIVAHNNALLALLVSNNFSEIKSSVFKRFSKENIHSLVYSDSVERFHITAFLLFVLAQNILEAEGPWFESFLYNALLVFVCEML IDIIKHSFLAKFNDIKPIAYSEFLEDLCNQTLKIQSADKDKILSFIPLAPACVVIRVVTPVYAARLPYSPLPWRIFWIFLLSSMTFVMLMSLKIMIGMGL QKHASWYVNRCRKRKHHLHSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	0	1
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	1.4	0.8433
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	3.2	0.7651
AT1G01710			Acyl-CoA thioesterase family p...		Lus10030385 [exp]	3.5	0.8132
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	4.5	0.8361
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	9.4	0.7729
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	11.4	0.7888
					Lus10001749 [exp]	13.2	0.6925
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	16.2	0.7259
					Lus10023643 [exp]	16.4	0.7681
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	16.5	0.7468

Compare expression of checked genes

Lus10015372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.