Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15280 126 / 5e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13630 66 / 8e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G01110 66 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 64 / 4e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 64 / 6e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 63 / 1e-10 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 57 / 9e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G19290 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 56 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G06580 55 / 4e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033008 [exp] 330 / 8e-104 AT5G15280 889 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 75 / 2e-14 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 70 / 7e-13 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 66 / 1e-11 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018113 [exp] 64 / 7e-11 AT5G01110 293 / 3e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022401 [exp] 63 / 1e-10 AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038804 [exp] 62 / 3e-10 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 61 / 9e-10 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 60 / 1e-09 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086000 [exp] 157 / 2e-42 AT5G15280 984 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 70 / 5e-13 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 70 / 6e-13 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 66 / 2e-11 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G013300 [exp] 63 / 1e-10 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 62 / 2e-10 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 61 / 3e-10 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.010G234500 [exp] 61 / 4e-10 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G071600 [exp] 60 / 8e-10 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 60 / 1e-09 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015373 pacid=23160883 polypeptide=Lus10015373 locus=Lus10015373.g ID=Lus10015373.BGIv1.0 annot-version=v1.0 ATGGTTGCGAGAGTTATTACTGGTGTTCTAAAGGATGGCATGTGGGAGCAAGCCCATGTTATTGTCGATGAGATGATAGATGATGGACTAACTCCCAGAT TATCAACTTTCAGAGTTCTCCTTGCAGGCTACTTTAAAGTCAGAAAGTTTGAAGAAGCTAAGTCAGCCATTTTTGAGATGGCAAGGCTTGGTTTGTTTGA CACATCTTCTATTGAGGAGCCACTATCTAAAGCATTTGCTATCTTAGGGTTCAACCCAACCATTGTGAGGTTTAAGCGTGACAGTGGAAGAAGTTTACAG AAGAAAGAGTTCTCTGACCATCTTGGAAATGGACTGTGTATGGATACAGACATTGAGGAGTTCGAATACAAAACGGTATTTGCTCCCGTGGAATTGGAGC TTCTCGAACGCATGTTGGTTTTCCATCCTAACTCAAGGCGAGAAGTTTGTCATATGTTCCTAGAAAAGCTATCGAGTACTGGCTTTGCATCCATTGCTTG TCTATTGCTGGAAGACTTTGAAAAACATGGGTTCAGTATGGATGGAAGTACTTACAGCCGTATTATAGCTGGTTTATGGAAAGAGCGGAAATATGTAGAT GCCTACAAACTTTTTAACGACGTTTTGGGTAGAAGCTTGGTTCTGGGCTCGGATGTTTCTGTTATTATTATTCCTGATCTTTGTAAGGTTAGTCTTGAGA TGGATGATGTGCTGGAAGGGACCAAACTTAGAGAAGATTCTTCATCTTCGTTTTCGATCATTAGTGCACTACATAGGAGATTTGGTGCGACAGGAAATGT TGAAGAAGCAGCCAGTCTGCTCCGGGGTATGTTGTCAAAAGGACTACTCGTGGATGCTGAAATATGTGAAATGATATTCCAGGGGTATTGCAAAGCAAGT AACTTGGGCAAAGCCAAAGAGATGCTTTGTGTCCTGATGCGGAAAGGCTTGCACCTTTCAGTATTAAGTTACCGAACTGGGTTCGTTTAG
AA sequence Show only first row Show all	>Lus10015373 pacid=23160883 polypeptide=Lus10015373 locus=Lus10015373.g ID=Lus10015373.BGIv1.0 annot-version=v1.0 MVARVITGVLKDGMWEQAHVIVDEMIDDGLTPRLSTFRVLLAGYFKVRKFEEAKSAIFEMARLGLFDTSSIEEPLSKAFAILGFNPTIVRFKRDSGRSLQ KKEFSDHLGNGLCMDTDIEEFEYKTVFAPVELELLERMLVFHPNSRREVCHMFLEKLSSTGFASIACLLLEDFEKHGFSMDGSTYSRIIAGLWKERKYVD AYKLFNDVLGRSLVLGSDVSVIIIPDLCKVSLEMDDVLEGTKLREDSSSSFSIISALHRRFGATGNVEEAASLLRGMLSKGLLVDAEICEMIFQGYCKAS NLGKAKEMLCVLMRKGLHLSVLSYRTGFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10015373 [exp]	0	1
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10007943 [exp]	3.2	0.7543
AT1G48360			zinc ion binding;nucleic acid ...		Lus10037442 [exp]	5.2	0.7517
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	6.1	0.7639
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	14.1	0.7268
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	19.3	0.7428
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	20.7	0.7365
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	24.9	0.6747
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	24.9	0.6790
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	25.1	0.7265
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	33.2	0.6989

Compare expression of checked genes

Lus10015373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.