Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 338 / 2e-110 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 322 / 6e-104 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 280 / 5e-89 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26640 247 / 1e-75 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 241 / 7e-73 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26440 240 / 5e-72 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G37260 207 / 4e-62 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G30250 206 / 3e-61 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 204 / 1e-59 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G07100 191 / 1e-57 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033000 [exp] 830 / 0 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 311 / 1e-100 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10037131 [exp] 306 / 9e-99 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 290 / 5e-94 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 292 / 2e-93 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10026634 [exp] 285 / 2e-90 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10016595 [exp] 265 / 1e-81 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 262 / 6e-80 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10027139 [exp] 260 / 3e-78 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120800 [exp] 549 / 0 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.017G088300 [exp] 451 / 9e-154 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2) Potri.010G163000 [exp] 358 / 3e-118 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 355 / 4e-117 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 261 / 2e-80 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 263 / 2e-79 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 261 / 2e-78 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G087900 [exp] 257 / 2e-78 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.016G128300 [exp] 256 / 8e-78 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G133200 [exp] 247 / 1e-75 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10015377 pacid=23160853 polypeptide=Lus10015377 locus=Lus10015377.g ID=Lus10015377.BGIv1.0 annot-version=v1.0 ATGGCAGACAAACGAGATTCTTCTTCTTCGGCGGCGCTGCCTCGGCCTACCATCACTCTTCCTCCTCGCCCTTCCATGGATACTTTCTTCTCCGGCGGCC TAAGCCCCGGTCCCATGACTTTAGTCTCAAGCTTCTTCTCTGATAGCTACCCCGGAGATTCCGACAGCCGTTCCTTCTCCCAGCTTCTGGCCGGCGCTAT GGCTTCTCCGCTTGCTAGGCCTTCTTTCTTCCCCGAGTTTTCCCCTCGCGTCCCTGCTGCTTCTTCTTCTTCCGCCGCCTTGTCCTCTACGGAAGATGCT GCTCCTGGAACAACTGCCGGTTTCGGGTTTAAGCAGAGTAGGCCTATGAACTTAGTGGTTCCACGCTCCCCTCTCTTCACAGTTCCACCTGGATTGAGCC CTTCCGGGCTGCTTAACTCTCCTGGTTTCTTTCCACCCCAGAGTCCCTTTGGAATGTCGCACCAACAAGCTTTGGCACAGGTGACAGCACAAGCTGCAAT AGCCGCTCAATCTCAAATGTATATGCAGGCCCAATTTCATCCATCTTCGGTAGCTGGTCCTGCAGAGGTATTGCCAGTTCAACCATCCTATACTGCTGCT GAAGATTCAAATTGGCAGATGCCACCCACAACTTCCAATCTTCAAAACACTGTACTGGAGCCTTCTGAATTCTCTCACTCTGAGAAATATCAGCCACTTC CTCCTGCTGTTGATAAACCTAGTGATGATGGTTACAACTGGAGAAAGTATGGTCATAAGCCAATTAAGGGCAGTGAATATCCAAGGAGCTACTACAAATG CACACATCCGAATTGCCCTGTAAAGAAGAAAGTAGAGCGTTCCGGTGATGGCCAAATAACTGAAATCATCTATAAAGGTCAGCATAACCATGATCTTCCG CAATCGAATAAGCGTGCAAGGGATAACAGTGATCAAAATGTGAGCATCAGTTCTCAGTTTAAAACTGAACCTGTTCCACAAGGTCAACCTTGTGATGCAA ATATGCTGCATGAAATAGCACCTGCTTATTCAGAGAGTGGTAGGGATCAGGAATCCAGACAAATGGACCCTACAGAACTACCTGCACCTAGTAGCTATAG GAGAGCTGAAGATCAGATTGCAAACGAACAAGAAGCGGCTGATAATGCACCAAATTTAAAGAGAAGGAAAACAGATGCTGGAGCATCTGAGGTAGCTTCA TCTCACAAAACAGTCACAGACGCAAAAATAATTGTTCAGACTCGAAGTGAAGTTGATCTTTTAGATGATGGCTTTAGGTGGCGGAAGTATGGCCAGAAAG TAGTGAAAGGGAATCCTCATCCTAGGAGCTACTACAAATGTACGAGTGCAGGGTGCAATGTTCGTAAACACGTGGAAAGAGCCGCAGCTGACCCCAAAGC TGTTATAACAACGTACGAGGGAAAGCACAACCATGACGTCCCTGCTGGAAGAAACAGCAGCCACAACAAGGGGGGGAACAATTACTCCAAGATCCAGAGT ATGGTGGCTCACAAACCACAACAGCAGCTTCAATCGTTGGAAGGTATGAACTATGGAAACAATGAGGAGCAAAGACCAGTACTCCTTCGCCTAAAAGAAG AGGAAGTTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10015377 pacid=23160853 polypeptide=Lus10015377 locus=Lus10015377.g ID=Lus10015377.BGIv1.0 annot-version=v1.0 MADKRDSSSSAALPRPTITLPPRPSMDTFFSGGLSPGPMTLVSSFFSDSYPGDSDSRSFSQLLAGAMASPLARPSFFPEFSPRVPAASSSSAALSSTEDA APGTTAGFGFKQSRPMNLVVPRSPLFTVPPGLSPSGLLNSPGFFPPQSPFGMSHQQALAQVTAQAAIAAQSQMYMQAQFHPSSVAGPAEVLPVQPSYTAA EDSNWQMPPTTSNLQNTVLEPSEFSHSEKYQPLPPAVDKPSDDGYNWRKYGHKPIKGSEYPRSYYKCTHPNCPVKKKVERSGDGQITEIIYKGQHNHDLP QSNKRARDNSDQNVSISSQFKTEPVPQGQPCDANMLHEIAPAYSESGRDQESRQMDPTELPAPSSYRRAEDQIANEQEAADNAPNLKRRKTDAGASEVAS SHKTVTDAKIIVQTRSEVDLLDDGFRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVITTYEGKHNHDVPAGRNSSHNKGGNNYSKIQS MVAHKPQQQLQSLEGMNYGNNEEQRPVLLRLKEEEVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	0	1
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	7.1	0.9205
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	10.3	0.9329
AT3G24090			glutamine-fructose-6-phosphate...		Lus10020198 [exp]	11.0	0.9039
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	12.4	0.9148
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10032509 [exp]	13.8	0.9220
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	14.1	0.9180
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	19.4	0.9153
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10027230 [exp]	26.8	0.8815
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	34.6	0.9190
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	36.2	0.9154

Compare expression of checked genes

Lus10015377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.