Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29185 471 / 3e-161 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) AT3G29200 314 / 5e-101 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT1G69370 305 / 7e-98 CM-3, CM3 chorismate mutase 3 (.1) AT5G10870 213 / 1e-63 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032999 [exp] 727 / 0 AT3G29185 478 / 7e-168 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10032998 [exp] 488 / 1e-168 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10019795 [exp] 290 / 2e-93 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10007444 [exp] 200 / 1e-58 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1) Lus10014114 [exp] 189 / 8e-56 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1) Lus10019796 [exp] 56 / 1e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120900 [exp] 522 / 0 AT3G29185 518 / 0.0 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Potri.017G088700 [exp] 339 / 9e-111 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 292 / 9e-93 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1) Potri.018G019250 [exp] 206 / 5e-61 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01817 [flax] [poplar] CM_2 Chorismate mutase type II CL0116 [flax] [poplar] Calycin PF12204 [flax] [poplar] DUF3598 Domain of unknown function (DUF3598)
Representative CDS sequence Show only first row Show all	>Lus10015378 pacid=23160869 polypeptide=Lus10015378 locus=Lus10015378.g ID=Lus10015378.BGIv1.0 annot-version=v1.0 ATGAGAGCTTCAGCACCTCACACCTCCAAGTTGTCTGTTCCTTTCTGCCGTCTTTCTCCGCTCGGAACAACCAGGACTTGGTCTAGGCTCCCGCTTCCTT CTTCATCAAATCTTGCTAAGCGTGTCATCATCCTCTGCGCAAACTCTTCTCAGCCTTCTCCTGCCTTGGCGAAGAAGAAAAGGGTTGATGAAAGTGAAAC TTTGACACTAGACAGCGTAAGGCGTTCCTTGATACGTCAAGAAGACAGTATCATATACAGCCTTTTGGAGAGGTCTCAATACTGTTACAATGCAGACACC TATAATCCTGATGCTTTCTCCATGGATAATTTTCACGGTTCTCTTGTTGAGTACATGGTTAAAGAAACTGAAAAGCTGCATGCCAAGGTGGGTAGGTACA GAAGTCCTGATGAGCATCCTTTCTTCCCAGATGATTTACCTGAACCATTGTTGCCACCAATGCAGTATCCCAAGGTGCTACATGATATTGCTGATTCAGT GAATATAAATAGTACCATCTGGAGCATGTACTTTAACGATCTTCTTCCAAGGCTGGTCAAGGCAGGAGATGATGGAAACTGTGGGTCCACAGCAGTATGC GACACGATCTGCGTCCAGGCTCTGTCCAAGCGAATCCATTATGGAAAATATGTAGCCGAGTCTAAATTTCGTGAGAACCCAAATGAATACAGAGCTGCTA TAGAAGCACAAGACAAAGAGGGATTGATGACCTTGCTGACGTACCCAGAAGTTGAGAAAAAGGTAGAAGAGCGAGTAGAGGTGAAAGCCAGGACATTTGC GCAGGAAGTGACAATGAAAGAAGGAAATGCTGAATGCGAACCAGTATACAAGATAGACCCAAGCTTGGTTGCTGATCTGTATGGGAAATGGATCATGCCT CTGACCAAGGAAGTTCAACCAGGCCACCCCTTCAATTCTCCTCCTCTCCCCACCCATCTTTCACTTCCATCCATGGCTTCTTCTTATGCTGCTTCTGTTT CTGTTACCTTCTCTATCTCCTTCCTTCCCTTTACTCAATCTCCCACCCTCCCTTCCCGAACCACACTTCCCTCCTCCTCCACCACTTTCCCTACTCGTCG TCTCCGTCTTCGCCGCCCAATTTCGCCTTTACTCCCGGCTGCCGCAATTGTTGATGAACCACCTACAGATACCGACTCCAATCCTGCAGGTACCAAAACG AAGGCCACAGAGCCCGAAGAGCCCGAACCCGAGCAGGATCCAATCACAGTCGAAACTCTCCATCGCTTCTTCGACCTCAACGTTGGGAAATGGCGCGGCT CCTTCTACCAATTCAATGGTAATGGGAGGATGATGCAGAAGATCAGTACCAGACTCTCTGTCAGTACTTATGGAGAAGACGAATTAATCAGCCTCATTCA AACGCTCTACATAAAACAACCTTCACTCAGCTCCTCGGAGGATCCAGAATGGGCAGAATACAAGATCAAAGAGACCAACATGTTCACCGTCGACAAATAT CAGCAGATCGGATTTTTCTCAGATAAAAGGGCTTTTGCTTTGAGGTACCAGACTGTTGGTATGTTGGAGTATGTATTGAGGCAAGGTGTGTTGGGGGAAC ATGACACAGGGGAAGACTCCCCCAGAAATCTTAAGATTCCTTCTCGTAAGCCTTCCGTTGTATGTGAGAATTGCTTATATTCACAAGAGAGAGATAGGCG AGTAAGAGCCTTTCACATTATGAACCCTGGAGGTGTCTTAGATATGCTTCTTATGTTCGTCGAGGATAGAGACGATGGGAATCAGCATCCTCCTCCTTCA TCACTTGATGCTGATAACAGTGACAGGCTTCAACCATTCCTTGGTAGGTGGGAAGGACGGTCAATAACTAAACGAAGTGGTGTTTATGATTCAACACTTG CTGAAGCTGATAATGTTGTTTTACTTGAGATGAATGAGGAGGGTCAGCTAATCCAGGATATCGCAACCACTACTGACGCAAGTGGCGTGACAACAAATGT GAATTGGACGGGTACCATGGTTGATAACTTGATTGTATTTGATGGAGGGTATCAGACGACTCTGTTACCTGGAGGGATGTACATGGGATGTCCTTGTGAT ATTGGAAAGATTGTTGCAGAGTCCAAGTCATTTCATCTGGAGTTTTGCTGGATTGAATCTCCTGGGAAGAGACAAAGACTAGTTAGGACTTACGATGTAG AAGGTTTGGCAGTCTCATCAACATACTTCTTTGAAACTAGAGTTTATTAG
AA sequence Show only first row Show all	>Lus10015378 pacid=23160869 polypeptide=Lus10015378 locus=Lus10015378.g ID=Lus10015378.BGIv1.0 annot-version=v1.0 MRASAPHTSKLSVPFCRLSPLGTTRTWSRLPLPSSSNLAKRVIILCANSSQPSPALAKKKRVDESETLTLDSVRRSLIRQEDSIIYSLLERSQYCYNADT YNPDAFSMDNFHGSLVEYMVKETEKLHAKVGRYRSPDEHPFFPDDLPEPLLPPMQYPKVLHDIADSVNINSTIWSMYFNDLLPRLVKAGDDGNCGSTAVC DTICVQALSKRIHYGKYVAESKFRENPNEYRAAIEAQDKEGLMTLLTYPEVEKKVEERVEVKARTFAQEVTMKEGNAECEPVYKIDPSLVADLYGKWIMP LTKEVQPGHPFNSPPLPTHLSLPSMASSYAASVSVTFSISFLPFTQSPTLPSRTTLPSSSTTFPTRRLRLRRPISPLLPAAAIVDEPPTDTDSNPAGTKT KATEPEEPEPEQDPITVETLHRFFDLNVGKWRGSFYQFNGNGRMMQKISTRLSVSTYGEDELISLIQTLYIKQPSLSSSEDPEWAEYKIKETNMFTVDKY QQIGFFSDKRAFALRYQTVGMLEYVLRQGVLGEHDTGEDSPRNLKIPSRKPSVVCENCLYSQERDRRVRAFHIMNPGGVLDMLLMFVEDRDDGNQHPPPS SLDADNSDRLQPFLGRWEGRSITKRSGVYDSTLAEADNVVLLEMNEEGQLIQDIATTTDASGVTTNVNWTGTMVDNLIVFDGGYQTTLLPGGMYMGCPCD IGKIVAESKSFHLEFCWIESPGKRQRLVRTYDVEGLAVSSTYFFETRVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29185			Domain of unknown function (DU...		Lus10015378 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	6.5	0.9153
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	6.9	0.9177
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	9.9	0.8654
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	11.5	0.8943
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	15.2	0.9153
AT1G31130			unknown protein		Lus10028643 [exp]	19.2	0.8917
AT1G68585			unknown protein		Lus10021686 [exp]	20.4	0.9042
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	23.2	0.8914
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	23.3	0.8501
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	23.3	0.8975

Compare expression of checked genes

Lus10015378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.