Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01040 776 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 775 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT5G54690 492 / 6e-166 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT2G01220 461 / 3e-156 Nucleotidylyl transferase superfamily protein (.1.2) AT3G27610 432 / 7e-145 Nucleotidylyl transferase superfamily protein (.1.2) AT3G58790 381 / 7e-123 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 334 / 4e-104 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 333 / 5e-103 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT2G20810 311 / 2e-96 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G25140 308 / 9e-95 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032990 [exp] 859 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 809 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10030703 [exp] 786 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10032989 [exp] 650 / 0 AT2G01220 537 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2) Lus10035836 [exp] 499 / 8e-169 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 427 / 7e-143 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10041389 [exp] 338 / 2e-105 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 337 / 2e-104 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 335 / 6e-104 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090800 [exp] 794 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.004G124500 [exp] 789 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.010G120200 [exp] 502 / 4e-172 AT2G01220 589 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2) Potri.001G416800 [exp] 506 / 3e-171 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 503 / 3e-170 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 388 / 1e-125 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.006G001100 [exp] 340 / 2e-106 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 333 / 4e-103 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 332 / 1e-102 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 332 / 3e-102 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10015379 pacid=23160885 polypeptide=Lus10015379 locus=Lus10015379.g ID=Lus10015379.BGIv1.0 annot-version=v1.0 ATGACGGAAGCTTGTGTTCGAGCTCTGGTTGAAGCCATCCACTCCGCCCCTTCCCAGGCTGTTATCTATCTTTCGGGGGGCGCTTCTCAGAGCCTTGGAT TGTTGATGTCCGTTCCTGGCGCTTCCTCTACAGTTCTTGAAGCTCTGGTGCCTTACTCACGACTCTCCACCGTTGATTTACTTGGCAAGATTCCTAGTAA TTTCTGTAGCCAGCAAACAGCTGAGGAAATGGCTTTGTTGGCTTACAATCGGGCTCTTAAGCTTTCCTCCCCTGGTGTTCCGGTTATTGGAGTGGGCTTC ACCGGATCTCTAGCCACCAGTCGTCCAAAACTTGGGGATCACAGGTTTCATTTATCTACTAGAACCTGTAACCAGCTTTATTTGTCAACAATTACCTTGT CAAAGGCAGGTGGAATGCGAACCCGAGAGGAGGAAGATACGGTGTCAAGTCAATTCTTATTGAAGGCCATGGGAAAAGCATGCCAAGTGGAGCAACCATC GGGGTCTCCTTTATCTGAATCAGACTCATTGGATGAGTATGAAAAACAATTCACGGAAGACGAAGAGCTACAGCAAGTTATAGATGGTCAAATATGCTTT AAGATGTACCCATTTTCAGATGCACCCAAGAATGAGAGGAAGATTATACTTCCTGGTTCTTTTAATCCCTTGCATGAAGGTCACCTCAAGCTTCTGGAGG TTGCTACTAGCATTGGCGGTGATGGCTATCCATGTTTCGAAATATCAGCTGTAAATGCTGACAAGCCTCCTCTTTCTGTCTCACAAATCAAAGATCGGGT CAACCAATTTCGAAAAGTTGGAAAGACAATAATTGTATCTAATCAACCCTATTTCTATAAGAAGGCTGCGCTTTTCCCTGGAAGTGCTTTTGTCATCGGT GTAGACACTGCAGCAAGGAAGATGGTAGACATTCTTGGTGCATGCAAAGCAAGAGGAAGCACTTTTCTTGTTGGTGGACGGAGCATGGATGGAGCTTTCA AGATTCTTGGGGACTTGGAGATTCCAGAGGAGTTGAAAGATATGTTCATAGCTATACCAGCTGAAATGCGTTCTAATATTTGTTTCCTTCTCTTGCTTCT TGCGACTGCTTCAGATTGCTTAGGTAGGCGACTTGGGCCAAGACTTCTTGGCAGAGTGGATGATTCTGGGCAGAGGTTGGTTAAGGACCTCCACAAGATA CTAAATCAAGTAAATACTGAGGAAATCCCTGATGGTCTAAAGCTCCCCGAGTCTTTTAGTGAACTTGTTTCTGAAATGAAGAGCAACCAATATGATGCAA AGACATTTGGTCTTACATTGAGAGCTATGATGGAAAAATTTGAACGGGAAATTAGGGAATCCAAGTTTGCAGAGCTGATGAACAAACACTTTGCAGCAAG TTCTATTCCAAAAGGCATCCACTGTCTTTCTTTGCGTTTAACAGATGAATATTCCTCTAACGCTCATGCACGGAGGCAACTGCCTGCTCCAGAGTTGCTT CCTTTGCTATCTGACAACTCTTACCATCACTTCATACTGTCAACTGACAACATATTAGCTGCATCAGTTGTTGTGACTTCTACTGTGGCATCATCTAAAA CCCCTGAAAAGATTGTCTTTCATGTTGTCACTGACAAGAAAACTTATGCTGGGATGCATTCTTGGTTTGCGCTAAACCCTGTCTCTCCAGCCATCATTGA AGTTAAAGGCGTTCATCAGTTTGATTGGCTCACAAGGGATAATGTACCTGTGCTGGAAGCTGTTGAGAACCATAATGGTATCAGGAACTATTACCATGGA AACCATGTTGCAGGTGCAAATCTCAGTGATACAACTCCACGCATGTTTGCTTCAAAACTGCAAGCTAGAAGTCCAAAGTACATTTCCTTACTCAATCACC TCCGAATATATTTGCCCGAGCTATTTCCAAACCTTGACAAGGTGGTCTTTCTGGATGATGATGTCGTGATTCAGCGTGATCTTTCTCCACTTTGGGACAT TGACCTTAAAGGAAAGGTTAATGGTGCGGTGGAAACATGTAAAGGTGTGGATGAGTGGGTGATGTCCAAGCGTTTCAAGAACTACTTCAATTTTTCTCAT CCCCTCATATCAAACAACTTGGACCCGCAAGAGTGTGCTTGGGCTTATGGAATGAATATATTTGATCTTCATACATGGAGGGAAACAACTATAAGAGAAA CTTACCATTCTTGGCTGAGAGAGAATCTGAAGTCAAACTTGACAATGTGGAAACTTGGAACATTGCCGCCTGCTCTGATCGCATTTAAAGGTCATGTGCA TGCAATCGAGCCGGAATGGCATATGCTTGGGCTTGGGTATCAGAATTTGACAGACATTGAGAGTGTGAAAAAGGCTGCGGTTATCCACTACAATGGACAG TCAAAGCCGTGGTCGCCTATTGGATTTGAGCATCTGCGGCCGTTTTGGACAAAGTACGTTAATTACTCCAATGATTTCATACGTAACTGCCACATCATGG AGACGTAG
AA sequence Show only first row Show all	>Lus10015379 pacid=23160885 polypeptide=Lus10015379 locus=Lus10015379.g ID=Lus10015379.BGIv1.0 annot-version=v1.0 MTEACVRALVEAIHSAPSQAVIYLSGGASQSLGLLMSVPGASSTVLEALVPYSRLSTVDLLGKIPSNFCSQQTAEEMALLAYNRALKLSSPGVPVIGVGF TGSLATSRPKLGDHRFHLSTRTCNQLYLSTITLSKAGGMRTREEEDTVSSQFLLKAMGKACQVEQPSGSPLSESDSLDEYEKQFTEDEELQQVIDGQICF KMYPFSDAPKNERKIILPGSFNPLHEGHLKLLEVATSIGGDGYPCFEISAVNADKPPLSVSQIKDRVNQFRKVGKTIIVSNQPYFYKKAALFPGSAFVIG VDTAARKMVDILGACKARGSTFLVGGRSMDGAFKILGDLEIPEELKDMFIAIPAEMRSNICFLLLLLATASDCLGRRLGPRLLGRVDDSGQRLVKDLHKI LNQVNTEEIPDGLKLPESFSELVSEMKSNQYDAKTFGLTLRAMMEKFEREIRESKFAELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARRQLPAPELL PLLSDNSYHHFILSTDNILAASVVVTSTVASSKTPEKIVFHVVTDKKTYAGMHSWFALNPVSPAIIEVKGVHQFDWLTRDNVPVLEAVENHNGIRNYYHG NHVAGANLSDTTPRMFASKLQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLKGKVNGAVETCKGVDEWVMSKRFKNYFNFSH PLISNNLDPQECAWAYGMNIFDLHTWRETTIRETYHSWLRENLKSNLTMWKLGTLPPALIAFKGHVHAIEPEWHMLGLGYQNLTDIESVKKAAVIHYNGQ SKPWSPIGFEHLRPFWTKYVNYSNDFIRNCHIMET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	0	1
AT1G21370			unknown protein		Lus10042793 [exp]	1.7	0.9426
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	2.0	0.9639
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	3.5	0.9482
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	3.9	0.9388
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	6.0	0.9321
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	6.9	0.9302
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	6.9	0.9235
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	6.9	0.9363
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	7.5	0.9419
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	8.5	0.9139

Compare expression of checked genes

Lus10015379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.