Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39210 130 / 2e-39 CRR7 chlororespiratory reduction 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032982 [exp] 137 / 1e-42 AT5G39210 101 / 1e-28 chlororespiratory reduction 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120300 [exp] 133 / 2e-40 AT5G39210 132 / 6e-40 chlororespiratory reduction 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12095 [flax] [poplar] CRR7 Protein CHLORORESPIRATORY REDUCTION 7
Representative CDS sequence Show only first row Show all	>Lus10015380 pacid=23160955 polypeptide=Lus10015380 locus=Lus10015380.g ID=Lus10015380.BGIv1.0 annot-version=v1.0 ATGTTGAGAGGAGCTTCATCTTCAACCAATGCGGCGCTTTCAGCGGGGAAAGCCTTTGGGAACCAAGGTAGTAGCCGAGGTTCTGCTGCCTGGCATAATT GCTGCGTATCTCCACAAATATTAACTCATAATACTTCACCACCAACACTTCATTCTTCACCATCTGTTCCAAGATTAGTACTAAAGGTTTGGGCGACAAG AAGGAGGAGACAGGAGAGGTCGGACACATATGTGCTGCTGGAGCCAGGAAAGGATGAAACATTTGTTAGCGAGGAGGAACTGAAAGTGAGACTGAAGAGT TACTTGGAGAATTGGCCCACAAAGACCTTACCACCGGACCTTGCTAGATTTGAGGAGATGGAGGATGCTGTCGCTTTCTTGCTGGCTTCTGCTTGCGAGC TGGAAATTGATGGCGATGTTGGTTCTCTTCAATGGTATCAAGTTCGTTTGGATTGA
AA sequence Show only first row Show all	>Lus10015380 pacid=23160955 polypeptide=Lus10015380 locus=Lus10015380.g ID=Lus10015380.BGIv1.0 annot-version=v1.0 MLRGASSSTNAALSAGKAFGNQGSSRGSAAWHNCCVSPQILTHNTSPPTLHSSPSVPRLVLKVWATRRRRQERSDTYVLLEPGKDETFVSEEELKVRLKS YLENWPTKTLPPDLARFEEMEDAVAFLLASACELEIDGDVGSLQWYQVRLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	0	1
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	2.2	0.9651
AT3G06670			binding (.1.2)		Lus10021547 [exp]	3.9	0.9539
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	5.9	0.9475
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	6.0	0.9487
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	7.7	0.9561
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	8.0	0.9458
					Lus10030090 [exp]	8.5	0.9404
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	9.8	0.9526
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	12.2	0.9521
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	12.6	0.9428

Compare expression of checked genes

Lus10015380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.