Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02110 731 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 604 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 563 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 550 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G07990 513 / 5e-180 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 508 / 5e-178 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 463 / 3e-160 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 456 / 6e-157 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 449 / 5e-154 SCPL40 serine carboxypeptidase-like 40 (.1) AT2G35770 435 / 2e-149 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019954 [exp] 604 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 600 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10023505 [exp] 516 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 508 / 6e-178 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 488 / 3e-169 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10032980 [exp] 432 / 1e-150 AT3G02110 317 / 2e-106 serine carboxypeptidase-like 25 (.1) Lus10010190 [exp] 433 / 3e-148 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 431 / 2e-147 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 413 / 1e-140 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120100 [exp] 774 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 764 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.006G183200 [exp] 608 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 597 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.008G041800 [exp] 525 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 520 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 491 / 2e-171 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 484 / 2e-168 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 479 / 2e-166 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.001G261100 [exp] 467 / 2e-161 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10015382 pacid=23160913 polypeptide=Lus10015382 locus=Lus10015382.g ID=Lus10015382.BGIv1.0 annot-version=v1.0 ATGGAGGAGGGGAGGAATAAGGTTGCATTTGCTGCTATGGGGTTGGTAGTGAAAATGATGTTGGTTTTAGGAATATTTTTGGTGATGGTGGGTAGTGTTA GTTGTACTAGTAAGGAGGAGGATGAGGGAATTAGTACTAGTGGTAGTGATAGATCAGCAGAAACAAGGTGGTCATCAGAGGACAGGATAGGTTCACTACC AGGGCAGCCTAAAGTGAAGTTTGAGCAATACTCTGGGTACGTGACGGTGGACAAAGCAGCCGGGAGGGCCTTGTTTTACTGGCTCACTGAAGCTCCTTCT GCCTCTCATCCTTTGTCAAAGCCCTTGGTTGTTTGGCTCAATGGAGGGCCAGGTTGCTCATCAGTGGCATATGGTGCATCAGAGGAAGTTGGGCCATTCA GGATAAACAAGACTGCTTCAGGTTTATACCTCAACAAGTACTCATGGAACTCTCTCACCAACCTCCTCTTCCTCGAAACCCCTGCCGGTGTTGGTTTCTC TTATACCAACCGATCCTCCGATCTGCTTGACACCGGCGACATTCGCACAGCCGAGGATTCGCTAGAGTTCCTGGTACAATGGTTGGACCGGTTCCCACGT TATAAGAACCGAGAAGTTTATCTAACAGGAGAGAGCTATGCAGGTCATTATGTACCTCAGCTAGCTAGACAGATTTTGCTCCACAACAAGAAATCCAAGC ATCCAGTCATTAATCTCAAAGGAATCATGGTGGGGAATGCTGTGACAGACAACTATTACGACAACCTTGGAACAGTAACGTATTGGTGGAGCCATGCCAT GATATCGGATACAACTTACAGGCGGCTCATCAATACTTGTGATTTCAGGAAGGAGAAGGAGTCTGATGAGTGTGAATCCTTGTATAGTTATGCTATGGAT CAAGAGTTTGGCAACATTGATCAGTACAACATTTATGCACCTTCTTGTAACCGATCTGATGGCACTCGGCGCCACTCTTCTATTCGATTGCCTCACCTTC CCCACCATCGTAATACTAAGGTTCGAGATAATGATCAGATGATGATCACAAAGCAGCTGTCTGGTTATGACCCTTGCACGGAGAAGTATGCTGAGGTATA TTACAATAGGGAAGATGTGCAGAAAGCTCTCCATGCCAACACAACAAGTCTTGATTACAAATGGACTTCTTGCAGTGAGGTTCTGAACCGAAATTGGAAT GATACAGAGGTATCCATCCTCCCAATCTACAGGCAAATGATTGCAGCAGGCCTCAGGGTTTGGGTTTTCAGTGGGGATGTTGACTCAGTGGTGCCGGTAA CAGCTACAAGGTACTCCCTGGCTCAACTCAAGCTGCCAACGAAGTTACCATGGTACCCTTGGTACGTTAAGAAGCAGGTGGGAGGGTGGACAGAGGTGTA CCAAGGACTAACGTTTGCAACGGTGAGAGGAGCAGGACATGAAGTGCCACTATTCAAACCCAAAGCAGCTCTTCAGCTACTCAAATCTTTCTTGAAAGGC CAACCTCTTCCCAAATTTTGA
AA sequence Show only first row Show all	>Lus10015382 pacid=23160913 polypeptide=Lus10015382 locus=Lus10015382.g ID=Lus10015382.BGIv1.0 annot-version=v1.0 MEEGRNKVAFAAMGLVVKMMLVLGIFLVMVGSVSCTSKEEDEGISTSGSDRSAETRWSSEDRIGSLPGQPKVKFEQYSGYVTVDKAAGRALFYWLTEAPS ASHPLSKPLVVWLNGGPGCSSVAYGASEEVGPFRINKTASGLYLNKYSWNSLTNLLFLETPAGVGFSYTNRSSDLLDTGDIRTAEDSLEFLVQWLDRFPR YKNREVYLTGESYAGHYVPQLARQILLHNKKSKHPVINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDTTYRRLINTCDFRKEKESDECESLYSYAMD QEFGNIDQYNIYAPSCNRSDGTRRHSSIRLPHLPHHRNTKVRDNDQMMITKQLSGYDPCTEKYAEVYYNREDVQKALHANTTSLDYKWTSCSEVLNRNWN DTEVSILPIYRQMIAAGLRVWVFSGDVDSVVPVTATRYSLAQLKLPTKLPWYPWYVKKQVGGWTEVYQGLTFATVRGAGHEVPLFKPKAALQLLKSFLKG QPLPKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	0	1
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	1.0	0.9679
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	1.4	0.9562
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	3.0	0.9528
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	3.5	0.9350
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	4.5	0.9373
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	4.5	0.9358
					Lus10026122 [exp]	6.2	0.9015
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	7.9	0.9211
					Lus10002011 [exp]	8.8	0.9025
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	11.8	0.9033

Compare expression of checked genes

Lus10015382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.