Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034879 [exp] 59 / 3e-10 ND / Lus10021807 [exp] 54 / 7e-09 ND / Lus10024980 [exp] 44 / 7e-06 ND / Lus10005471 [exp] 44 / 1e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015383 pacid=23160891 polypeptide=Lus10015383 locus=Lus10015383.g ID=Lus10015383.BGIv1.0 annot-version=v1.0 ATGGTTGGGAATGACGCACCACGTACTCTAGAGGACTATGTTCGCCCGACACTCGACGGGACTGCCTCGAGTGTGGTGAAGCTACCCATTGTCAAAGGGA AATTTGAGCTGAAATTCCAATACATTCAGATGGTCCAGCAAAGTCAGTATAGCGACGACCTCAACTCTGAATGTCCAAGTTGGCATCTAAAGGGCTTCCT CGAGATCGTAGATTTGATGAGAGTTTTTCTCGAGGGATTTTTCCCACCATACAAGACCAATGAGATACGGGGTCGGGTCTCAAACTTCAAGCTGAAGACC CTTACGGAGCTACCGAGAACTACCGACCACGATGTTGGAAAAGCATCCAACATGATGCGTACCAAGCTCGATGCGATAGTATCCACACTTAGCAATCTCG CGATGTCAAAGCCGGCGACCAAGTCTGAACAGGCACCTCCACAATCTTCGGCTCGGAGACTCAAGGGTCTCGTGGCCCAAATATTTGTTTGTGAAGGTTG TGGGGATGAAGGAAACGATGCTTCCACTTGTCAAGCACTCGGTCCGCCTTGTGTTGGTCGTAGACATGGTGAACTCGGGTGCTTCTGCATCAAAGGTGGA GCCCGAAATTGA
AA sequence Show only first row Show all	>Lus10015383 pacid=23160891 polypeptide=Lus10015383 locus=Lus10015383.g ID=Lus10015383.BGIv1.0 annot-version=v1.0 MVGNDAPRTLEDYVRPTLDGTASSVVKLPIVKGKFELKFQYIQMVQQSQYSDDLNSECPSWHLKGFLEIVDLMRVFLEGFFPPYKTNEIRGRVSNFKLKT LTELPRTTDHDVGKASNMMRTKLDAIVSTLSNLAMSKPATKSEQAPPQSSARRLKGLVAQIFVCEGCGDEGNDASTCQALGPPCVGRRHGELGCFCIKGG ARN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015383 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	1.4	0.8097
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	3.2	0.8126
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	17.6	0.8013
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	19.2	0.7866
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040245 [exp]	20.7	0.7867
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	35.0	0.7323
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10035918 [exp]	35.3	0.7765
					Lus10037930 [exp]	35.3	0.7407
					Lus10032429 [exp]	37.2	0.7061
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	37.7	0.7856

Compare expression of checked genes

Lus10015383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.