Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29390 393 / 6e-132 RIK RS2-interacting KH protein (.1) AT1G20920 45 / 8e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G51300 45 / 0.0001 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032979 [exp] 570 / 0 AT3G29390 306 / 2e-99 RS2-interacting KH protein (.1) Lus10035328 [exp] 47 / 2e-05 AT1G20920 293 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029986 [exp] 47 / 2e-05 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038932 [exp] 46 / 5e-05 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093600 [exp] 414 / 5e-140 AT3G29390 443 / 3e-149 RS2-interacting KH protein (.1) Potri.002G003600 [exp] 48 / 1e-05 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 47 / 2e-05 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G126400 [exp] 47 / 3e-05 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 44 / 0.0002 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015384 pacid=23160944 polypeptide=Lus10015384 locus=Lus10015384.g ID=Lus10015384.BGIv1.0 annot-version=v1.0 ATGACGGACGAAAGAAGCAATAGGGTTTCATCCGCTGATACGCCTCCAGATGTTACCGAATCCTCTCAATCGAGACCAAGGAAAAGGAGAAGGTGGGATG AACCGGCTGAGTCGCTGGTTTCCTTCAGAACTACAGTGCCGGGTGTTATCCCTATATACTCTGTTGGAGCTGCTGCTGCTCCCTGTGCATCAGTCTCTGG TGCTCTTATTTCAAATCTGCAGCCTAAGATCCAAGATGAGTTGATAATTGCACGAGACATTGTGATAAATGACGCAGAAGCCCCAGCTCGTTACAAGCTC ACAAAGCGTCAAACACAAGAAGAGATTCAAAAGTGCACTGGTGCTGTAGTGATAACTAGAGGCAAGTATCGCCCTCCTAATGCACCCGCTGATGGTGAAA AACCATTGTATCTTCACATATCTGCAGGGGCACAGTTGAAAGACACAGCAGAGCGGATCTTGGCAGTTGATAGGGCTGCTGCTATCATTGACGAAATGTT GAAACAGGGCCCGAGCTTGCAGTCGTCTTTTCCGGTTTTCCAGACGGCCCTGAGTGATGGAGTGATGGCGCTGAGCACAAGTGTATATTTGGGATTTGAA GCAGATCCATCAAAGAACTTTGCTGCAAGAATTCGCGGCCCAAACGATCAGTATATAAATCACATTATGAATGAAACAGGAGCAACTGTTGTGCTAAGAG GCTCTGGTTCTGGTCACCCTGGACATCAAAATGAGGCAGAAGCCCAGCAACCTCTTCATTTGTTCTTAACCTCAACTAACTCGAGAAGTCTTGAAAATGC TCAAAGTTTGGCTGAAAATCTTCTGCAGACGATTAGCTTAGAGTGTGGCGCATCTAGGGTTGCATCGGAGAAGGTTTACAATGCCGTACCACCTCCACAG CAGTTACTGGGTGGCGCTCAGACTTCATCACTCATGACATCAGTGCTGTCAACAACAGCAATTCCCAGTATGACTGCCGTAGGTGCTCAAGGTGTTATGT CATCTGCTGAGGCTACGAATGGCCCTGGCTTACATCAGTTGAGCCCAGCTGCATATCCACGTGATCTTTTAAATGGGGGTACCTGCTACCATGGATACGC TGGTATATATCCTCAGGCCACGCCTTTGCAACAAGTTGCTCTTGTTCTGAGACAGTCACCTTCTCCCACCACGTCCACAGTCGCTCCTGCAACATCAGTT GGGAGCGAAGCATCACTCATAAGAACGTCTGCAGATACAGTTACAACATTCACTTCTGAGGAGAAGCGGCCTTCTCAAAGACGAAAGTTTCAAGAGTTAG CAGTTGACTCAAAGGTTCCTGGAAGACAACTCAAGACACACAAGGAAGTGATCAAATTTTCTGCAATTTAG
AA sequence Show only first row Show all	>Lus10015384 pacid=23160944 polypeptide=Lus10015384 locus=Lus10015384.g ID=Lus10015384.BGIv1.0 annot-version=v1.0 MTDERSNRVSSADTPPDVTESSQSRPRKRRRWDEPAESLVSFRTTVPGVIPIYSVGAAAAPCASVSGALISNLQPKIQDELIIARDIVINDAEAPARYKL TKRQTQEEIQKCTGAVVITRGKYRPPNAPADGEKPLYLHISAGAQLKDTAERILAVDRAAAIIDEMLKQGPSLQSSFPVFQTALSDGVMALSTSVYLGFE ADPSKNFAARIRGPNDQYINHIMNETGATVVLRGSGSGHPGHQNEAEAQQPLHLFLTSTNSRSLENAQSLAENLLQTISLECGASRVASEKVYNAVPPPQ QLLGGAQTSSLMTSVLSTTAIPSMTAVGAQGVMSSAEATNGPGLHQLSPAAYPRDLLNGGTCYHGYAGIYPQATPLQQVALVLRQSPSPTTSTVAPATSV GSEASLIRTSADTVTTFTSEEKRPSQRRKFQELAVDSKVPGRQLKTHKEVIKFSAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	0	1
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	2.8	0.8635
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	3.0	0.8619
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	5.3	0.8741
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	6.7	0.8188
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	9.8	0.8454
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	10.8	0.8399
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	13.0	0.7690
					Lus10000409 [exp]	13.0	0.8507
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	13.4	0.8110
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	14.5	0.8544

Compare expression of checked genes

Lus10015384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.