Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15540 1975 / 0 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032966 [exp] 498 / 4e-156 AT5G15540 337 / 3e-99 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092600 [exp] 2402 / 0 AT5G15540 2142 / 0.0 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015385 pacid=23160861 polypeptide=Lus10015385 locus=Lus10015385.g ID=Lus10015385.BGIv1.0 annot-version=v1.0 ATGAGCAATCCAACTGCTGAACCCAGCGGTTCTAGTTCAGGATTCTCCTTGCAAGGGATTGGACTCTCCAACACAATACATTCGGAAGTTGCGCCATGCT TGCCGCTACCTTTCCTTCCGGTGTTCTGCGGCGCTTCCGATCCGGAAATCCGACTTTTCGATGAGCGCAGTGGTGGTGGTGAAAGTCTTTCGTATTTGGA TCGAAGTGAAATTGTAGCTCAGTCTGCTAGAATTGCTGAACTGCTTCGAGAAACTGATGTTTCGTACATTAATCTTCGAAACAATGCAAGGCCTATGACT CTGGACTATGTGATACCTTTGGAACTTTGTGACCATGTTCTCCAGTGCAATCCTGAAGCTTTTGAGCACTCCACTCCCGGTAAGGCGCAACTTTCTGGAA ATATAGCCTCTGAAAGCAGGCATGTTCGTGTTGAGACCAGTATACCTGTTCTGCTTAAGGTGCAAAATGACGATGTCAATCTAATGCGAAAGACGTTGCA GGATATTGGTTCATCCTCTAGGAAACCAAAAGCCAAGAAAAAAGGTGTCGAAGATATCTCGGCACCGGTCCAGCTAGAACCGACTGACCTTCCTGGGCTT CAGGATACCATTATTAGGAACTTCTGTGATGCATTGGAGGATTTCTGTGTCAAAGCTGAAGTTCTAAGTGATGAACATGAAGAAGTAGAGTGGTTGGTAT TACCTGCCAGTGATGTTAGGTTGCTTGTCAATGAAATCATGTTGATTCGTGGAAAGAAACTTCTACATTTGGTTCCTCTTGAGGCACTTGTAAGATTGTT ACGCATTCTAGATCATCAGATACATCGAGCAGAAGGCTTATCAGTTGATCAGTATGACCACTCAGACTCGGATGTCGTTTCAAACGTCTTTTCTGCCTTG GAGTCTATTCATGCGGCTCTAGCTGTCATGGCTCACAATAACATGCCTAAACAGCTCTACAAAGAAGAGATCATTGAAAGAATTCTGGAGTTTTCTAAGC ATCAGATGGTGGATATTCTGTCAGCTTATGATCCGTCATTTCGGGCTTTGCACAAGCCAAATGAACGCGAGACATATGAAGATGATGAAAACGAAGACCC TCAGGCTGATTACGCTCCATCAGGCAAGAGATGGCATGTTCAAAAGAGTGTAAAAATGAAGAAATCAGCTTATAATAAGGTCACCAGTTCCATGAATGCA ATTCTACAGAAACTGTGCACTATAATTGGCTTACTGAAGGAACTGTTATTAATAGAGAGGTTATCTGATAGTTGCATTTTACAATTAGTGAAGACAAGCT TCACGACCCTTTTGGTTGATAATGTTCAACTCCTTCAGCTTAAGGCGATTGGTCTACTTGTTGGGATATTCTATTCTTACACACAACATCGAGTATATAT CGTGGATGAGATGGTTCAGTTACTATGGAAGCTACCAGTCTCAAAACGTGCACTACGAGCCTATCACCTGCCTGATGAAGACCAAAAGCAGATTCAGATA ATACCTGCCTTGCTAATTCAATTGGTACACAGTAGTGCAAACCTTCCTGAAGCGTTAAGGCAAGCATCAAGTGGTCATTCTATCTTGGAAGTCTCATTGG ATGCAACCTATATCACTAAATGCCATGAAGCTGTAACAGACACATGCTGCCTTTTCTGGACCCGTGTACTTCAGCGGTTTACAACAGTGAAAGCACAGGA TTCTTCTGAAATGAAGGTGATAATGGAAAACCTTGTTACAGACTTGCTGACAACTCTGAACTTGCCCGAGTACCCTGCTTCAGCTATAATTCTGGAGATC CTCTGTGTCTTTCTACTGGAAAATGCTGGGCTCAAATCCAAGGATGTTGCAGTGCGTTCTATGGCAATTGATCTTCTTGGGATGATTGCTACTAGTTTGA AACATAGTGCCGCCATTTGTAGCAGGAATACTTTCTGGATGTTACAGGCATTAGACGGTGGAGATGATGCTAATTGTAGTCTACAAACAGATGCATGTTG TATTTGCTCTGATGGAAGAGTTGAGAAAGCACTGTTCGTATGTCAAGGTTGTAACAGATTGTTTCATGCTGATTGCATGGGTGCAAGAGAACGTGAAGTC ACTCGGAACTGGTATTGTCAGATTTGTCTATGCAAGAAGCAGCTTCTTGTGTTGCAGTCATTCTCCAAGATGCAGTGCAAGGATGAAGGAAGAGGAAACA AATCGCGATCTAGCAAATTCCCTGAAAATTCTGATCTGATTGTGCCAAAAGTTGAAATTATCCAACAGACACTCTTAAATTACCTCCAAGATTCTGTTTC TGCTGATGATATGCATCACTTCATCTGCTGGTTCTATCTTTGCTTATGGTACAAGGACGACCCAAAATCTGAGCAGAGATTAACTTATGACCTCATGAGA TTAAAATCAAATCTGATCGTGCGTGATTCTGGCACTAGCCATTCCACATTGACAAGGGAGTCGTTTAATAAGATTACAAGAGCATTGGGACAAAATAGTT CTTTTGCTCGAGGTTTCAACAAAATTCTTCATCTGCTTCTGGCAAGTTTAAGGGAGAATTCCCCAGTAATCAGGGCCAAGGCATTGCGAGCTGTAAGCAT AATAGTAGAAACTGATCCTGGGGTCCTGCGTGACAAAGGGGTTCAATTTGCAGTTGAAGGGAGATTTTGCGATTCTGCAATATCAGTAAGGGAGGCCGCC TTGGAACTGGTAGGAAGGCATATTGCTTCGCATCCGGATGTAGGGCTACAGTATTTTGAGAAGGTTGCTGAGAGGATCAAAGACACTGGTGTGAGTGTCC GGAAGAGGGCCATTAAAATTATCCGAGACATGTGTACTTCAAATGCCAACTTCTCTCAATTTACAACTGCTTGCATTGAGATAATCTCTCGTGTGAGTGA TGACGAATCAAGTATTCAGGACCTTGTCTGCAAGACATTTTACGAGTTCTGGTTCGAGGAACCTTCTTGTGTGCAGACAACTTTTTCTGGGGATGGCAGT TCTGTTCCTTTAGAAGTGGCTAAGAAGACCGACCAGCTTGTTGAAATGCTAAGGAGAATGTCAAGTCATAGCCTTCTCATTACTGTCATTAAACGCAACC TCGCCCTTGACTTCTTTCCACAGTCTGCTAAAGCTGTTGGGATCAATCCCATGTCACTTGCATCTGTGAGGAAACGCTGTGAGCTAATGTGCAAGTGCAT ACTCGAAAGGATATTGCAGGTGGAAGAAATGAACAACACTGAAGAGGAGGTGCAAACTCTGCCTTATGTGCTGGCATTGCATTCATTTTGTGTGGTGGAT CCAACACTTTGTGTTCCCTCTTCAGACCCATCTCAGTTTGTTGTCACTCTGCAGCCTTATCTTAAAACTCAGGTTGATAACCGAGTTGTTGCAAACTTTC TGGAGAATATAATCTTCATAATTGATTCAGCACTTCCCCTGATCCGAAAATTGACACCAGTTCTCGTTGAAGAACTTCAGCAAGACCTTAAACAAATGAT CTTACGGCACTCCTTTTTTACCGTCGTGCATGCTTGCATCAAGTGTCTTTGCACGTTGAGTAGAGTTGGTGGAAAAGGGGCTAGTGTAGTTGAGTTCCTT ATACAGATGTTCTTCAAACGTCTAGATGCTCAAACTCAAACATTTCAAAATAAACAGTTGGTAGTTCGTTCTCTGTTTTGCCTTGGGTTGCTTATTCGAT ATGGAAGTCCTCTGGTCAGTGAGTTGGGTAACAAAAATATTGATATTGCCAGTAGTCTCAGCTTGTTTAAGAAATACCTCATAGTGGACGACTTCAGTGT CAAAGTCAGATCTCTGCAGGCCTTAGGCTTTGTCCTAATTGCCAGACCCGAATATATGCTAGAGAAAGATATTGGAAAAATATTGGAAGCAACTTTATCA CCGAGTTCTCATGTTCATATGAAGATGCAAGCACTGCAAAATCTGTATGAGTATCTTCTGCATGCGGAAAACGAGTTGGAAACAGATAAAACTAGCAATG ATGCTCAAAGTTCTGTTGGAGCTGGTCAAAGGGTACCGGTTGCTGCAGGAGCTGGGGATACTAACATCTGTGGTGGTATCGTCCAGTTATATTTTGATCG CATCATAGGAAGGTGCTTAGATTTCAATGCCCAAGTTCGCAAGACTACACTTCAGATTGTGGAGGTGGTGCTACGGCAAGGTCTTGTTCATCCTATTAGT TGTGTTCCCCATCTCATAGCTCTAGAAACTGACCCATTAGAGTCTAACTCAAAGTTGGCACATCATCTTCTGATGAATATGAATGAGAAGTACCCAGCTT TCTTTGAAAGTCGATTAGGGGATGGTCTGCAGCTATCATTTTCATTCGTGCATTCTCTTTCTGGCGTCTCCCATGAAAACTTGAATCAAATGTTCCCACA AAAGGCTGCCGGAAGTTTGAAAGGAAAGTCTGAAGTCGGTAATCTAGCTCAGGCTAGGCTTGGGGTTTCTCGGATCTACAAGCTTATTCGAGGAAATCGT ATTTCGCGGAATAAGTTTATGTCTTCAATCATTCGCAAATTTGATAATCCGAGCCGTATTGACTCGGTGATTTCCTTTTTGATGTACTGTACCGAAGTGC TTGCTCTACTGCCATTCACTATTCCCGATGAACCACTCTATCTTGTTTATTCTATAAATCGGGTAATCCAAGTTAGGGCTGGGGTGCTTGAGGCAAACAT GAAGGGCCTCATATTGCATCTGTCACAAAGAAGTGCCCGTAGGCCACACCATGATACTGAATTAGTTCACCCGGAAGCAAATCAGCTTCATTTCCAGCAA GTGGAGAAGATGGACTTTGATGGATTGGTTAATGAACAGCATGTTGGTTTGCCATTATTTGATTTGAATGGAACGGCAAAAGAGGAGCCGTCTGACCAGT CAGTTTTGACCTCAAGAGATTCGAAAGCAGGGTATAGGAAGTCAGTTGAGCCTTGCAGCATCTCCGAGGATGATGTCAAAAGAATCCAGGTTGAGTGTCT GTCAGCCACTGCATTGCAGCTTCTTCTAAAGCTGAAGAGGCACCTAAAAATTGTGTATGGCCTGAATGATGCCCGCTGTCAGGCATTTTCTCCGAATGAA CCCCCAAAACCGGGAGAGAATCTATCTAGGCAGAATGTTCCGTTTGACATAAGTGAAACGCGGACTGGTTTGGCTTCAACTTACCAAGATTTGGTACAAG GATATCAGGATCTGAAAAATGCACTTAAAGAAGACACTGTAGATTATTCTACGTACACAGCTAACATCAAGAGGAAGAGGCCAACACCAAGAAAGAAAAC GAATCGTCGTGTGATGGCAAATGATGAAGGTATGGAGGATGACGACGACGAAGATGATGATGCAGGGTGGACAGGCGGGAGAAGGAAGTTAAGTGGTAGC AGCAGTAGGAGAGCCGAAAGCACCAGAAGAGGCAGACAACGATGA
AA sequence Show only first row Show all	>Lus10015385 pacid=23160861 polypeptide=Lus10015385 locus=Lus10015385.g ID=Lus10015385.BGIv1.0 annot-version=v1.0 MSNPTAEPSGSSSGFSLQGIGLSNTIHSEVAPCLPLPFLPVFCGASDPEIRLFDERSGGGESLSYLDRSEIVAQSARIAELLRETDVSYINLRNNARPMT LDYVIPLELCDHVLQCNPEAFEHSTPGKAQLSGNIASESRHVRVETSIPVLLKVQNDDVNLMRKTLQDIGSSSRKPKAKKKGVEDISAPVQLEPTDLPGL QDTIIRNFCDALEDFCVKAEVLSDEHEEVEWLVLPASDVRLLVNEIMLIRGKKLLHLVPLEALVRLLRILDHQIHRAEGLSVDQYDHSDSDVVSNVFSAL ESIHAALAVMAHNNMPKQLYKEEIIERILEFSKHQMVDILSAYDPSFRALHKPNERETYEDDENEDPQADYAPSGKRWHVQKSVKMKKSAYNKVTSSMNA ILQKLCTIIGLLKELLLIERLSDSCILQLVKTSFTTLLVDNVQLLQLKAIGLLVGIFYSYTQHRVYIVDEMVQLLWKLPVSKRALRAYHLPDEDQKQIQI IPALLIQLVHSSANLPEALRQASSGHSILEVSLDATYITKCHEAVTDTCCLFWTRVLQRFTTVKAQDSSEMKVIMENLVTDLLTTLNLPEYPASAIILEI LCVFLLENAGLKSKDVAVRSMAIDLLGMIATSLKHSAAICSRNTFWMLQALDGGDDANCSLQTDACCICSDGRVEKALFVCQGCNRLFHADCMGAREREV TRNWYCQICLCKKQLLVLQSFSKMQCKDEGRGNKSRSSKFPENSDLIVPKVEIIQQTLLNYLQDSVSADDMHHFICWFYLCLWYKDDPKSEQRLTYDLMR LKSNLIVRDSGTSHSTLTRESFNKITRALGQNSSFARGFNKILHLLLASLRENSPVIRAKALRAVSIIVETDPGVLRDKGVQFAVEGRFCDSAISVREAA LELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNANFSQFTTACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSCVQTTFSGDGS SVPLEVAKKTDQLVEMLRRMSSHSLLITVIKRNLALDFFPQSAKAVGINPMSLASVRKRCELMCKCILERILQVEEMNNTEEEVQTLPYVLALHSFCVVD PTLCVPSSDPSQFVVTLQPYLKTQVDNRVVANFLENIIFIIDSALPLIRKLTPVLVEELQQDLKQMILRHSFFTVVHACIKCLCTLSRVGGKGASVVEFL IQMFFKRLDAQTQTFQNKQLVVRSLFCLGLLIRYGSPLVSELGNKNIDIASSLSLFKKYLIVDDFSVKVRSLQALGFVLIARPEYMLEKDIGKILEATLS PSSHVHMKMQALQNLYEYLLHAENELETDKTSNDAQSSVGAGQRVPVAAGAGDTNICGGIVQLYFDRIIGRCLDFNAQVRKTTLQIVEVVLRQGLVHPIS CVPHLIALETDPLESNSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFSFVHSLSGVSHENLNQMFPQKAAGSLKGKSEVGNLAQARLGVSRIYKLIRGNR ISRNKFMSSIIRKFDNPSRIDSVISFLMYCTEVLALLPFTIPDEPLYLVYSINRVIQVRAGVLEANMKGLILHLSQRSARRPHHDTELVHPEANQLHFQQ VEKMDFDGLVNEQHVGLPLFDLNGTAKEEPSDQSVLTSRDSKAGYRKSVEPCSISEDDVKRIQVECLSATALQLLLKLKRHLKIVYGLNDARCQAFSPNE PPKPGENLSRQNVPFDISETRTGLASTYQDLVQGYQDLKNALKEDTVDYSTYTANIKRKRPTPRKKTNRRVMANDEGMEDDDDEDDDAGWTGGRRKLSGS SSRRAESTRRGRQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	0	1
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	1.0	0.9377
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	6.3	0.9153
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	6.5	0.8974
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	6.9	0.9104
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	6.9	0.8682
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	7.9	0.8728
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	9.6	0.8645
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	10.7	0.9038
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	12.6	0.8890
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	13.7	0.9072

Compare expression of checked genes

Lus10015385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.