Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20050 229 / 2e-76 HYD1 HYDRA1, C-8,7 sterol isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032965 [exp] 404 / 2e-145 AT1G20050 261 / 5e-89 HYDRA1, C-8,7 sterol isomerase (.1) Lus10027993 [exp] 384 / 3e-137 AT1G20050 266 / 1e-90 HYDRA1, C-8,7 sterol isomerase (.1) Lus10008164 [exp] 200 / 6e-66 AT1G20050 164 / 4e-52 HYDRA1, C-8,7 sterol isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160500 [exp] 310 / 2e-108 AT1G20050 269 / 4e-92 HYDRA1, C-8,7 sterol isomerase (.1) Potri.001G070301 [exp] 139 / 1e-42 AT1G20050 115 / 1e-33 HYDRA1, C-8,7 sterol isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05241 [flax] [poplar] EBP EXPERA (EXPanded EBP superfamily)
Representative CDS sequence Show only first row Show all	>Lus10015386 pacid=23160854 polypeptide=Lus10015386 locus=Lus10015386.g ID=Lus10015386.BGIv1.0 annot-version=v1.0 ATGGAAGGGTCAGTTCATCCGCATCCCTATGTCCCCAGGGATCTCCAACTCCCCGGTTTTGTTCCTCCATTTCTCTCTCAGTCCGCTATCCTCGGAATCT ACGGCATCGCCTCTCTTCTTGTCGTTTCAATCGTCTGGCTCTTCTCTGGCTTCTCCAACAAAAAGATTACTAAACTCGACAGATCGCTCATGTGCTGGTG GGCTTTCACGGGTCTCACTCACTTGATCCTCGAAGGTTATTTCGCCTTTGCACCCGAGTTTTACAAGGACAAATCGGGCTTCTTTCTTGCTGAAGTCTGG AAAGAATACAGCAAGGGTGATTCAAGATACGCAGCAAGAGATTCTGGTGTAGTTTCCGTGGAAGGGTTGACCGCAGTCTTGGAGGGTCCAGCCTGCCTGT TAGCAGTATATGGGATTGCTGCAGGGAAGTCGTACAGTTACATACTGCAGTTTGCTATATCTCTGGGTCAGCTATATGGAACTGCAGTCTATTTCATTAC CTCTTATCTTGAAGGAGATAACTTTGCTGCCACTCCCTTTTACTACTATGCTTACTACATTGGTGCAAATGCATCATGGGTTGTCATACCTTCCCTCATC GCCTTGCGCTGTTGGAGGAAGACTTGTCAAGCCTTCAACCTCCAAGCATCCAGGAAGACCAAAACTCGCTGA
AA sequence Show only first row Show all	>Lus10015386 pacid=23160854 polypeptide=Lus10015386 locus=Lus10015386.g ID=Lus10015386.BGIv1.0 annot-version=v1.0 MEGSVHPHPYVPRDLQLPGFVPPFLSQSAILGIYGIASLLVVSIVWLFSGFSNKKITKLDRSLMCWWAFTGLTHLILEGYFAFAPEFYKDKSGFFLAEVW KEYSKGDSRYAARDSGVVSVEGLTAVLEGPACLLAVYGIAAGKSYSYILQFAISLGQLYGTAVYFITSYLEGDNFAATPFYYYAYYIGANASWVVIPSLI ALRCWRKTCQAFNLQASRKTKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	0	1
AT2G37195			unknown protein		Lus10019937 [exp]	2.0	0.9196
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	5.7	0.9215
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	5.9	0.9101
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10024692 [exp]	6.0	0.8996
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	6.3	0.8781
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	7.2	0.9152
					Lus10024121 [exp]	9.5	0.9167
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	17.9	0.8933
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	18.0	0.8463
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	18.7	0.8899

Compare expression of checked genes

Lus10015386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.