Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50380 1068 / 0 Prolyl oligopeptidase family protein (.1) AT1G69020 305 / 6e-92 Prolyl oligopeptidase family protein (.1) AT5G66960 224 / 3e-62 Prolyl oligopeptidase family protein (.1) AT1G76140 180 / 5e-47 Prolyl oligopeptidase family protein (.1.2) AT1G20380 172 / 1e-44 Prolyl oligopeptidase family protein (.1) AT5G24260 47 / 5e-05 prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032920 [exp] 1110 / 0 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015586 [exp] 421 / 2e-140 AT1G50380 348 / 5e-114 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 325 / 2e-99 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 310 / 6e-94 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032964 [exp] 233 / 8e-73 AT1G50380 206 / 4e-64 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 246 / 8e-70 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 192 / 4e-51 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 177 / 2e-46 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10032378 [exp] 176 / 2e-45 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001300 [exp] 1132 / 0 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 328 / 4e-100 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 259 / 7e-75 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247400 [exp] 181 / 3e-47 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 179 / 5e-47 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 163 / 1e-41 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 163 / 2e-41 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10015387 pacid=23160889 polypeptide=Lus10015387 locus=Lus10015387.g ID=Lus10015387.BGIv1.0 annot-version=v1.0 ATGATGGTATGGTGTTCTTCTACTTGTACTAATAATCCGGCACAGTGGGTAGGAGGAGGATTAAATCTGCAACACCCCGGATGGGAGAAACATCGGCCTG TGCCTGTGGCTGTGATAATGCGGCGGTTTTCCCGAGCAAATTTCAATTTCTTCGGAAATGTCAATCTCATTTCAAGCCCACTTAATCCAACAATCTCCGT ACTGACCCGCCACTCCTTCATATATACTGAAAATCCTCCAATACCTTCCCTCTTCCACCACCGCCGCCGTCACTCCCTACAACTGCGCTTCTCCATGTCG ACGACAGCTACTCCTCCGCCGCTGCCGCCCAAGGCCAATAAAATTGAGCATCGTATGGAGATGTTCAGCGATGTTAGGGTCGACAACTACTACTGGCTCC GAGACGATTCTCGATGCAGTCCTCAAGTCTTGTCGTACCTGAAGCAGGAGAATGCTTACACCGATTCTATCATGGCTGATACCAAGGGATTTGAAGAAAA ATTGTTTGGCGAGATGAGAGCAAGAATCAAAGAGGCAGATGTTTCCGCCCCGACTAGGAAAGGGGATTACTATTACTACAACAGGACCTTGGAAGGAAAG GAGTACGTTCAGCGCTGCCGGAGACATGTTGTCTCTACCCATTACTCCGTCCACGATACAATGCCATCTGGCCCTGAAGATCCTCCTGAGCATGTTATCT TGGATGAGAACATCAAGGCTCTACCGCATCAGTACTACAGTATTGGTGCTTTCACGGTCAGTCCCAACCAGAAGCTGGTGGCTTATGCTGAAGACACCAC GGGAGATGAAATTTACACTGTCTATGTCATTGATGCCGAGACTCTTTCTCCTGTTGGGCAGCCTCTCACAAAAGTGACTTCGGATGTCGAGTGGGCTGGT GATGATGCCTTAGTTTACATTACCATGGATGACACTCTTCGTCCAGACAAGGCTTGGCTCCATAAGTTGGGAACAGACCAATCAACGGACTGTTGTCTTT ATCATGAGAAAGATGACATGTTTTCACTCCTTCTGCAACTATCAGAAAGCCACAAGTATTTGTTCATTTCATCTGAAAGCAAAACTACAAAGTTCGTCTT CTATGTTGATGTTTCCAAACCCGAAGATGGTCCCAAGGTTTTGACTCCTTGTGTGACTGGCATCGATACCTCAGTCAGCCATCGCGGGAACCATTTTTTC ATCATGCGAAGAAGTGATGAAGTGTTCAATTCTGAATTGCTTGCTTGCCCTGTAGATGATATTTCCTCAACCACGGTTCTTATTCCTCACAGGGAGAGCA TAAAGCTTCAAGATGTACAACTTTTTGCTGATCACCTGGTTGCATATGAGCGGGAAAATGGTCTGCCAAAAATAACAGTCTATCAGCTTCCGCAAGTGAA TGATCCACTTACAAGTCTTAAAGGCGGTCGGACTGTTGATTTTGTTGACCCTGCATACACAGCGTATCCTAGAGAATCACCTTATGCTTCCAGTATTCTT AGGTTTTCTTATAGTTCATTGAGGACACCCTCCTCGGTGTATGATTATGACATGAACACAGGCATTTCTGTTCTGAAGAAAGTTGAAGCAGTTTTAGGAG GTTTTGATTCATCAAATTACGTCACCGAAAGAAAATGGGCCACTGCTTTAGATGGCACTCAGATTCCGATATCTATTGTCTATCATAAAGGTCTTGTAAA CCTTGATGGATCTGACCCATTACTGCTTTACGGCTATGGTTCATATGAGATCTGTATAGATCCCTCATTTAAAGCTTCAAGACTCGCTTTGCTAGATCGG GGCTTTGTCTTTGCAATAGCTCATATTCGCGGAGGCGGTGAAATGGGGAGGCAGTGGTACGAGAATGGGAAGTTTTTCAAGAAGAAGAATACGTTTACAG ATTTTATTGCTTGTGCTGAGTATTTAATACAGAATAAGTACTGCTCGAAGGACAAGTTGTGTATTGAAGGTAGAAGCGCTGGTGGTTTGCTTATTGGTTC AGTTCTCAACATGAGGCCTGATTTGTTCAAGGCTGCGGTTTCTGGAGTTCCTTTTGTTGATGTTGTGACAACAATGCTTGATCCAACCATACCTCTTACA ACTGCAGAGTGGGAGGAATGGGGAGATCCTCGAAAGGAGGAATTCTATCAATACATGAAGTCGTACTCCCCCGTGGACAATGTTGCGGCGCAAGACTATC CCAACATTCTTGTTACAGCTGGTTTACACGATCCACGCGTACTATACTCAGAGCCAGCGAAGTATGTGGCTAAGCTGAGGGATATGAAAACTGATGATAA CATGCTGTTGTTTAAATGCGAATTTGGTGCTGGACATATGTCAAAATCTGGAAGATTTGAGAAGCTGCACGAAGACGCATTTATATATACCTTCCTATTG AAGGCTCTAAACATGATTCCGCCCTCACACGTCAGCCAATGA
AA sequence Show only first row Show all	>Lus10015387 pacid=23160889 polypeptide=Lus10015387 locus=Lus10015387.g ID=Lus10015387.BGIv1.0 annot-version=v1.0 MMVWCSSTCTNNPAQWVGGGLNLQHPGWEKHRPVPVAVIMRRFSRANFNFFGNVNLISSPLNPTISVLTRHSFIYTENPPIPSLFHHRRRHSLQLRFSMS TTATPPPLPPKANKIEHRMEMFSDVRVDNYYWLRDDSRCSPQVLSYLKQENAYTDSIMADTKGFEEKLFGEMRARIKEADVSAPTRKGDYYYYNRTLEGK EYVQRCRRHVVSTHYSVHDTMPSGPEDPPEHVILDENIKALPHQYYSIGAFTVSPNQKLVAYAEDTTGDEIYTVYVIDAETLSPVGQPLTKVTSDVEWAG DDALVYITMDDTLRPDKAWLHKLGTDQSTDCCLYHEKDDMFSLLLQLSESHKYLFISSESKTTKFVFYVDVSKPEDGPKVLTPCVTGIDTSVSHRGNHFF IMRRSDEVFNSELLACPVDDISSTTVLIPHRESIKLQDVQLFADHLVAYERENGLPKITVYQLPQVNDPLTSLKGGRTVDFVDPAYTAYPRESPYASSIL RFSYSSLRTPSSVYDYDMNTGISVLKKVEAVLGGFDSSNYVTERKWATALDGTQIPISIVYHKGLVNLDGSDPLLLYGYGSYEICIDPSFKASRLALLDR GFVFAIAHIRGGGEMGRQWYENGKFFKKKNTFTDFIACAEYLIQNKYCSKDKLCIEGRSAGGLLIGSVLNMRPDLFKAAVSGVPFVDVVTTMLDPTIPLT TAEWEEWGDPRKEEFYQYMKSYSPVDNVAAQDYPNILVTAGLHDPRVLYSEPAKYVAKLRDMKTDDNMLLFKCEFGAGHMSKSGRFEKLHEDAFIYTFLL KALNMIPPSHVSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	0	1
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	2.6	0.8813
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	3.0	0.8968
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	3.2	0.8959
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	5.1	0.8718
AT4G20720			dentin sialophosphoprotein-rel...		Lus10031541 [exp]	5.5	0.8865
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	6.0	0.8747
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	6.2	0.8884
AT3G19870			unknown protein		Lus10030556 [exp]	7.5	0.8880
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	11.8	0.8499
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	12.5	0.8826

Compare expression of checked genes

Lus10015387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.