Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54140 461 / 7e-161 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G51760 347 / 4e-116 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT3G02875 342 / 4e-114 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 332 / 5e-110 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 326 / 5e-108 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 315 / 2e-103 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 310 / 2e-101 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032963 [exp] 746 / 0 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10030659 [exp] 389 / 3e-132 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 383 / 4e-130 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 364 / 2e-122 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 358 / 3e-120 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10016998 [exp] 351 / 3e-117 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 350 / 4e-117 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 343 / 2e-114 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10022761 [exp] 338 / 2e-112 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004000 [exp] 518 / 0 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 500 / 2e-176 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.002G082400 [exp] 372 / 2e-125 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 370 / 9e-125 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 365 / 4e-123 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 363 / 7e-122 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 360 / 4e-121 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 358 / 2e-120 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 360 / 3e-120 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10015388 pacid=23160887 polypeptide=Lus10015388 locus=Lus10015388.g ID=Lus10015388.BGIv1.0 annot-version=v1.0 ATGAGGGGAAATGGTTCCATAGCGCCTCTACAGATTCTGGGGTGCTACTGCTGCCTCTTTGTTTTCATTTGCCTTCCACTTGTAGTTCAGTGCGATGAGT TTTTGGGAAATGAAATCCTCAGCTTAGCTCAACAACACAAAGATTGGTTAGTATCCATTCGAAGAGAAATCCACGAAAACCCAGAACTTGGATTCCAAGA ACACAACACCAGCTCCCTTATTCGAAGGGAACTCGACGCTCTGGGCGTTCGTTACATTTACCCAGTTGCTAAAACTGGAGTGGTTGCTGTAATCGGTTCA GGCTCACCCCCAGTCGTCGCTCTTCGTGCCGATATAGATGCTCTCCCACTCCAAGAGTTGGTTCAGTGGAAGCACAAGAGCAAAATCGATGGAAGATGCA TGGGTGTGGACATGATGCCCACACCACCATGTTACTTGGTGCTGCCAAGTTGCTTAATCAAAGGAAACATCTGCTCAAGACTTTTTCTCCTGATGAACTT GGATGCTAGTTTTATGGATGCTATGTCATCGGGGACTGTGAGACTTCTTTTCCAACCTGCTGAGGAGGGAGGTGCAGGGGCATTGCATATGATACGAGAA GGTGCTCTTGGTGATGCTGAAGCTATATTTGGGATGCACATCGACGCGCAGATGGAGACCAGAATGATATCATCTCTTCCAGGATCCATATTAGCTGCTG TCTCATTTTTTGAAGTGAAGATACAAGGCAAAGGTGGTCATGCAGCAAAACCTCATACAAATATAGATCCTATAGTTGCTACTTCTTTCACAATTTTGGC ACTTCAACAACTCATATCAAGAGAAGCTGATCCCCTCGGTAGTCAAGTGTTGTCTGTTACTTACGTGAGAGGCGGAGACGCGTTCAGCGTAATCCCTTCA TATGTTGTCTTTGGGGGAACATTGAGGAGTCTAACAACGGAAGGGTTATATCAACTCCAGAAGAGGCTGAAAGAGGTTGTATTAGGGCAAGCTAAAGTAC TAAGATGCATAGCAGAGATCGACATGAAAGAAGAGGAGTACCCAGCATATCCAGCGGTAGTGAATGATGACATGCTGAACGAGGAGGTGCAGAGGGTAGG GAAGCTTGTTCTAGGAGAGGAGAATGTGAAGGTCGGTACGAAAGTAATGGCAGGGGAGGACTTTGCGTTTTACCAACAACAGATTCCAGGAGTGATGCTT AGCATTGGCATAAGGAACGAGCAAATTGGTTCAGTTCACTCACCACACTCTCCTTACTTCTTTCTAGATGAAGATGTTCTTCCTATTGGGGATGCCCATT CTTACCTACATCACCATACACACAAAGGCACACTTGTATAA
AA sequence Show only first row Show all	>Lus10015388 pacid=23160887 polypeptide=Lus10015388 locus=Lus10015388.g ID=Lus10015388.BGIv1.0 annot-version=v1.0 MRGNGSIAPLQILGCYCCLFVFICLPLVVQCDEFLGNEILSLAQQHKDWLVSIRREIHENPELGFQEHNTSSLIRRELDALGVRYIYPVAKTGVVAVIGS GSPPVVALRADIDALPLQELVQWKHKSKIDGRCMGVDMMPTPPCYLVLPSCLIKGNICSRLFLLMNLDASFMDAMSSGTVRLLFQPAEEGGAGALHMIRE GALGDAEAIFGMHIDAQMETRMISSLPGSILAAVSFFEVKIQGKGGHAAKPHTNIDPIVATSFTILALQQLISREADPLGSQVLSVTYVRGGDAFSVIPS YVVFGGTLRSLTTEGLYQLQKRLKEVVLGQAKVLRCIAEIDMKEEEYPAYPAVVNDDMLNEEVQRVGKLVLGEENVKVGTKVMAGEDFAFYQQQIPGVML SIGIRNEQIGSVHSPHSPYFFLDEDVLPIGDAHSYLHHHTHKGTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	0	1
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	1.0	0.9315
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	4.9	0.9188
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	5.7	0.8967
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	7.3	0.9132
AT1G30140			unknown protein		Lus10024751 [exp]	9.6	0.9191
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	12.3	0.9139
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	12.8	0.9135
AT4G35905			unknown protein		Lus10041873 [exp]	13.0	0.9007
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	13.7	0.8903
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	18.9	0.9026

Compare expression of checked genes

Lus10015388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.