Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46070 1268 / 0 Guanylate-binding family protein (.1) AT1G03830 428 / 5e-133 guanylate-binding family protein (.1.2) AT2G38840 134 / 3e-32 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013965 [exp] 1860 / 0 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 1582 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 1570 / 0 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 514 / 4e-165 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1) Lus10018755 [exp] 140 / 2e-34 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 137 / 2e-33 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 135 / 1e-32 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 103 / 8e-25 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049400 [exp] 1439 / 0 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 1434 / 0 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 939 / 0 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.002G046000 [exp] 135 / 9e-33 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 133 / 5e-32 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.005G168402 [exp] 114 / 2e-30 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015390 pacid=23160950 polypeptide=Lus10015390 locus=Lus10015390.g ID=Lus10015390.BGIv1.0 annot-version=v1.0 ATGTTGAAGAGGTTTAAAGGTCGCGGAGATAGTTCACCGGCACCCTCGCTGATTCCCCATTCTCCGGCGGCGTCAGTGTCTCCGGTGACAGGGCCGGCTA GGCCGATACGACTGGTTTACTGTGACGAGAAAGGTAAGTTCCGGATGGACCCGGAAGCAGTCGCAACACTTCAGCTTGTGAAGGGACCAATAGGGGTTGT GTCCGTTTGTGGCCGTGCTCGCCAGGGGAAGAGCTACATCTTGAATCAGCTGCTTGGGAGGAGTAGTGGATTTCAAGTAGCTTCAACTCACCGGCCATGT ACTAAAGGGCTCTGGTTGTGGAGCACCCCCTTAAAGAGAACTGATCTTGATGGTACTGAGTATAGTCTCTTACTTCTGGACAGTGAAGGCATTGATGCTT ATGATCAAACAGGAACATACAGTACACAGATATTCTCCTTGGCTGTACTCTTATCTAGCATGTTCATCTACAATCAGATGGGTGGAATAGATGAAGCTGC GCTTGATCGTCTTTCTCTAGTAACTCAAATGACAAAACATATTCGTGTGAGAGCTTCTGGTGGAAAGACTACTGCTTCTGAGATTGGGCAATTTTCTCCA ATTTTCGTTTGGCTACTGAGGGATTTCTATCTTGATTTAGCAGAGAATAATAAAAAAATAACACCCCGTGACTACTTGGAGCTCGCATTGAGACCTGTTC AAGGCAATCAAAGAGATATAGGTGCAAAAAATGAGATTCGAGATGCCATTCGAGCCCTATTTCCAGATAGAGAATGCTTCACACTTGTCAGGCCTTTGAA CAATGAAAAAGATCTTCAACAGTTGGATCAAATATCGTTGGAAAGGTTGAGACCTGAATTTAGATCAGGGCTCGATGCACTGACGAAATTCGTTTTCGAG AAAACAAGACCGAAGCAAGTCGGGGCAACTGTTATGACGGGGCCCATACTTGTTGGTGTTACAGAATCTTATCTGGAAGCCCTGAATAATGGTGCCGTGC CTACCATTGCTTCATCATGGCAGAGTGTTGAAGAAGCGGAGTGTCGAAGAGCTTACGATGCTGCTACGGAAACTTACATGTCCACCTTTGACCATTCAAA GCCACCCGAGGAAGGTTCTTTGAGGGAAGCCCATGAAGCAGCAGTGCAGAAGTCTATGGCCGTGTTCAATGGTGGTGCTGTAGGAGTTGGAAATGTCAGA AAGAAATACGAAGAGCTTCTTCAGAAATTCTTCAGAAAGGCATTCGAGGATTTTAAGAGGAATGCATTTATGGAGGCAGACTTGCATTGTTCAAGTACCA TCAAAAGCATGGAAAAGAGGTTGAGGGCAGCCTGTCATTCTTCAGACGCAAATCTAGATAAAGTTGTGAAGGTTCTTGATGTTCTTGTTTCCGAATACGA GGCATCGTGCCATGGCCCGGGGAAATGGGAGAAGTTAGCCATGTTCCTTCAACAAAGTTTGGAAGGGCCAATTCATGACCTTGGTAAGAGGCTTGCAGAT CAAATAGGCTCCGAAAAGACCTCCCTTACGTTGAAATTCCGTTCGATTGAGGACAAGATGGCGTTGTTGAGCAAACAGCTGGAAGCTAGCGAGAGTCATA AATCCGAGTATATGAGGCGTTATAACGAAGCTATCAACGAAAAGAAGCAGCTGGCAGACAATTACATGAAGCGAATTTCGGGCATACAGAGTGGCCACAG CTCTCTAGAAGAACGGTGCTCGAGCTTACGCAAGGCGTTGGAATCCACCAAGGAGGAAACATCGGAATGGAAGAGAAAACACGATCTGGTTATGTCGAAG CAGAAGGCTGTTGAGGATCTTAATAGTTCCGAAATTACAGTTCTCAAGTCTCGAAGCAGCGCTGCAGAGGCGAGAATGGCTGCTGCACATGAACAGATGA GAGCGGCTCAAGAAGAGGCTGCTGAATGGAAACGTAAATACGACAGTACCGTACGAGAAACTAAAGCTGCTCTGGAGAAAGCTGCACTCGCTCAAGAACG CTCGAGTAAAGAGACACAGCTGAGAGAAGATGCCATAAGAGAAGAGTTCTCAAGTGCTCTGGCTGATAAGGAAGACGAAATTAAGGCGAAGGGTTCGAAG ATAGAATTTGCCGAGCAGCGTATAACAACATTGAATTTGGAATTAAAGGCTGCAGAGGCAAGGATAAAGAGTTATGATGCAGAAGTATTATCTCTCAAAC TTGAAATCAGGACGCTAGTCGAGAGACTAGAGGCGGTGATGGTGAACGCTCAATCGTTCGAGAAAGAAGCGAGAATGCTGGAGCAAGAGAAGATTCACAT AGAGGAAAGGTACCGATCCGAGTTCGAGAGGTTTGCTGAGGTTCAGGAAAGGTGCACTCGTGCCGAGAGGGAATCCAAGAAGGCAGTTGAAGTGGCGGAT AAAGCACGGTCCGATGCAGTGACTGCACAAAAGGAAAAAAACGAGTTCCAGAAACTGGCTATGGAAAGGCTGGCTCAAATCGAGAGAGCTCGCAGGCAGA TCGAGAATCTGGAAAGAGAGAAGGAAGATCTGGCGAACGAACTTGAACAAGTTCGCGTCTCGGAAGTAGATGCCTTGTCGAGGGCTGAGCAGCTCGAAGG CAGAGTCGACGAGAGGGAGAAAGAAATCGAGAAGCTGTTGAAATTGAACAACGAAGATCGAGCCAGTAATGTGAAGGCTCTTCAAGGTCTATTGGAGGAC GAACGGAAAGCTCATAGTCTTGTGAACAAAAGGGCTGAAGAATTATCACTCCAGCTCGAAGAGGCGAGTGCAAAACTCGATATGCTCCAGCAGGAGTTGA CCTCGGTTCGGTTGAATGAGTCTGCTTTGGGCGGTAAACTGAAGGCTGTGGCTTCTTCTCATCGGGGGAAGCGTGTTAGGACGAACGAGGATTTCGAAAT GGGTGCGAACAAGAGGTCTAGGGGCACTGAAGATGGCGATTCGGCATTCATAGGGGATGATGCTGATGCTGATGAAGATAGTCAAAGCCAGCAGACCGGT CAAGAAGACTACACGAGGTTCACGGTTCAGAAGCTGAAGCGGGAGCTTACGAGGCTTGATTTCGGGGAGGAGCTTGTTGAGCTGCATCGGTCGAAGCATC CTAAGCACCCTAACAAGAAGGATATCATTGCTTTGTATGAGAAATGCGTGCTGCAGAAGTCATGA
AA sequence Show only first row Show all	>Lus10015390 pacid=23160950 polypeptide=Lus10015390 locus=Lus10015390.g ID=Lus10015390.BGIv1.0 annot-version=v1.0 MLKRFKGRGDSSPAPSLIPHSPAASVSPVTGPARPIRLVYCDEKGKFRMDPEAVATLQLVKGPIGVVSVCGRARQGKSYILNQLLGRSSGFQVASTHRPC TKGLWLWSTPLKRTDLDGTEYSLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKTTASEIGQFSP IFVWLLRDFYLDLAENNKKITPRDYLELALRPVQGNQRDIGAKNEIRDAIRALFPDRECFTLVRPLNNEKDLQQLDQISLERLRPEFRSGLDALTKFVFE KTRPKQVGATVMTGPILVGVTESYLEALNNGAVPTIASSWQSVEEAECRRAYDAATETYMSTFDHSKPPEEGSLREAHEAAVQKSMAVFNGGAVGVGNVR KKYEELLQKFFRKAFEDFKRNAFMEADLHCSSTIKSMEKRLRAACHSSDANLDKVVKVLDVLVSEYEASCHGPGKWEKLAMFLQQSLEGPIHDLGKRLAD QIGSEKTSLTLKFRSIEDKMALLSKQLEASESHKSEYMRRYNEAINEKKQLADNYMKRISGIQSGHSSLEERCSSLRKALESTKEETSEWKRKHDLVMSK QKAVEDLNSSEITVLKSRSSAAEARMAAAHEQMRAAQEEAAEWKRKYDSTVRETKAALEKAALAQERSSKETQLREDAIREEFSSALADKEDEIKAKGSK IEFAEQRITTLNLELKAAEARIKSYDAEVLSLKLEIRTLVERLEAVMVNAQSFEKEARMLEQEKIHIEERYRSEFERFAEVQERCTRAERESKKAVEVAD KARSDAVTAQKEKNEFQKLAMERLAQIERARRQIENLEREKEDLANELEQVRVSEVDALSRAEQLEGRVDEREKEIEKLLKLNNEDRASNVKALQGLLED ERKAHSLVNKRAEELSLQLEEASAKLDMLQQELTSVRLNESALGGKLKAVASSHRGKRVRTNEDFEMGANKRSRGTEDGDSAFIGDDADADEDSQSQQTG QEDYTRFTVQKLKRELTRLDFGEELVELHRSKHPKHPNKKDIIALYEKCVLQKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	1.0	0.9188
AT5G23200			unknown protein		Lus10010192 [exp]	6.2	0.8243
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	12.3	0.8274
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	13.5	0.8330
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	17.9	0.8062
AT5G10370			helicase domain-containing pro...		Lus10012750 [exp]	18.7	0.8091
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	18.7	0.8274
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	20.6	0.8251
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	21.9	0.8243
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	22.1	0.8379

Compare expression of checked genes

Lus10015390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.