Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1271 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 950 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 699 / 0 HSL2 HAESA-like 2 (.1) AT5G65700 639 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G09970 630 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 628 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 625 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G72180 585 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 583 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20270 583 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013968 [exp] 1765 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 1070 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 893 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 655 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 644 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10005491 [exp] 635 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 615 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10039641 [exp] 615 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 599 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049100 [exp] 1345 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 1315 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 1083 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 1072 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.002G106800 [exp] 661 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.006G235800 [exp] 659 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 651 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G009200 [exp] 637 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 626 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.018G088200 [exp] 614 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015393 pacid=23160902 polypeptide=Lus10015393 locus=Lus10015393.g ID=Lus10015393.BGIv1.0 annot-version=v1.0 ATGCATCATATCGCCGCCGGCGCTCTCCTCCTCCTCCTGCACCTCCTCCTCCTTTCATCTCCGTCAACCTCACTAACCCAAGAAGCACTAATCCTCCTTC AAGCCAAGCTCTCCTTCTCCGACCCGGATTCTTCCCTCTCATCATGGACCTCCTCCTCCGACCCTTCCTCCCCTTGCTCATGGAACCGGGTCAAATGCGA CCCGATTACCCGCTCCGTCACCTCCCTCGACTTCAAATCCGCCAACCTCGCCGGCCCATTTCCCACAATCCTCTGCCGCCTCCGCAGCCTCAACTTCATC TCCTTCTTCGACAACGCCATTAACGGCACTCTGCCTCCTGAAATCTCCACCTGTAAGTCCCTGGTTCACCTCGATCTCTCTCAGAATTTCCTCACCGGTA CGATTCCGGACACTCTACCCGACATTCCGAACTTGAAATACCTCGACCTCACCGGAAACAACTTCTCCGGCGAGATTCCTGCCTCGCTCGGCCGATTCGA GAAGTTGGAGGTGTTCGCCGTGGTTTATAATCTTCTTGACGGGACGATCCCTCCGTTTTTGGGGAACGTTTCGAGCTTGAGGATGCTGAATATGTCCTAC AACCCGTTTAGGACGGGTCGGATCCCCCCGGAGATTGGAAACTTGACGAATTTGGAAGTCCTCTGGCTGACGGAATGTAATCTTGTCGGTGAAATCCCTT CGTCTTTGGGTAGGTTGAAGAAGCTAACCGATTTGGATTTGGCGATTAATGGTTTGGTCGGGGAGCTTCCGAGTTCACTCACTGAGTTGCCCAATCTCGT CCAATTAGAGCTCTACAACAACTCGTTGACCGGAGAGCTTCCGGATGGGATGGGGAACTTAACGGCGTTAAGACTCCTCGACGCGTCGATGAATCAGTTA ACGGGGAACATCCCAGACGGTTTATGTCAGCTTCCGTTAGAAAGTCTCAATCTTTACGAAAACCAATTCGAAGGTGATTTACCGGCGAGCATTGGTTCTT CTCCGAACTTATACGAGCTCAGATTATTCGGCAACAAGCTCACTGGCGAGCTACCGCAAAACCTCGGCAGAAACTCGCCACTGAGATGGCTCGACGTCTC CAACAATCTCTTCACCGGTCCACTCCCGCCGGCGCTCTGCTCAAAGGGGGAACTTGAGGAGCTTCTCGCTATATACAACTCCATCTCCGGCGAGCTACCG GCGGGATTATCCGAATGCCGCAGCTTGACCCGGGTCCGATTAGGCTACAACAAACTCTCCGGCGAAATACCGGTCAATTTCTGGGGGTTGCCTCACGTTT CCCTGGTCGATCTCGTCAGCAACTCCTTCTCCGGCGAAATCGCGAAAACCATCGCCGGCGCATCCAACTTATCGATGCTGATTCTGGATAAGAACGGGTT CACCGGTCCAATTCCAGAAGAAATCGGTTGGGTCGGAAGTCTGGTGGAGTTCTCCGCTAACGGGAATAACTTCAGCAGCGGCTTACCCGGTAGCTTGGTG AATCTGAAGCAATTGGGGAAACTGGATCTCCACGGCAATCAAATCTCCGGTGAGATTCCTTCCGGAATCGACTCATGGAAGAAGCTGAACGAGCTCAATT TAGGGGAGAATCGATTTTCCGGCGAAATCCCTTGCTCAATCGGGAAACTCTCCGTTCTCAATTACCTCGATTTATCGGGAAACAATCTCGACGGCGAAAT CCCGTCCAGTCTCCAGAACTTGAAGCTGAACCAGCTCAATTTATCCAACAACAAACTCTCCGGCGAAATTCCACCTCTTTACGCTAAGGAGATTTACAAG AACAGTTTCTTAGGGAATCCCGGGTTATGCGGCGAGATTCCCGGATTATGCGCCGGCAAAGGAAGAAGAAACAACAGAGGTGAGGATTACGCATGGCTAT TGAGATCAATGTTTGTACTTGCAGCAGTAGTGTTTGTAGTAGGAGTCGTTTGGTTTTATGTCAAATACAAGAACATCGACGAGGTTACAAAATTGGCAGC AAGACCGATCGACAAGTCGAAATGGACGTTGATGTCGTTCCACAAGCTGGGATTCAGCGAGTACGAGATTCTCGACGCTTTAGACGAGGACAATGTGATA GGTTCCGGTTCGTCTGGCCGGGTTTACAAAGTTGTGCTGAGCAATGGGGAAATGGTGGCTGTGAAGAAGCTATGGGGATCAGGTGGCATGATGAACAAGG AATTATTCGAGAATGGCGGGGACGGGTTCGATGCTGAGGTGAGGACGTTGGGGAAGATTCGGCATAAGAACATAGTGAAGCTGTGGTGCTGCTGTGTGAC TAAGGACTGTAAGCTTCTGGTTTATGAGTATATGGTTAATGGGAGCTTGGGGGATTTGCTTCATGGTAGCAAGTCTGGGTTGCTGGATTGGCCTACTAGG TTCAAGATCATACTTGATGCTGCGGAAGGGATGTCGTACTTGCATCACGATTGCGTTCCTCCGATTGTTCATCGGGATGTTAAGTCGAATAACATCTTGC TTGATGACCAGTTCGGTGCTAGGGTTGCAGATTTCGGACTGGCTAAGGTCGTCGATTCTTCGGCCGGGAAGCCCAAGTCCATGTCTGTTATTGCTGGTTC ATGTGGCTACATTGCTCCAGAGTACGCATACACGCTACGAGTGAACGAGAAGAGCGACATCTACAGCTTCGGAGTCGTGGTACTCGAGCTAGTGACGGGG AGGCTCCCCGTGGATCCGGAGTTCGGGGAGAAGGACCTAGTGAAATGGGTACGGACCACGATCGACCAGAAGGGAGTGGACCACATCCTCGACTCGAAAC TCGACTCGTGTTTCAAGGAAGAGATATGCAGGGTTCTCAACATAGGGATACTATGCACAAGCCACCTCCCGATCAACCGGCCCTCGATGAGGAGGGTGGT GAAGATGCTTCAGGAGATCGGCGGAGATGCCCGAGAGAAGGCCGCCGCAATGAAGGACGGCAAGTTGACTCCTTATTACTATGAAGATGGGTCTGATCAT GGGAGTGTAGTTTGA
AA sequence Show only first row Show all	>Lus10015393 pacid=23160902 polypeptide=Lus10015393 locus=Lus10015393.g ID=Lus10015393.BGIv1.0 annot-version=v1.0 MHHIAAGALLLLLHLLLLSSPSTSLTQEALILLQAKLSFSDPDSSLSSWTSSSDPSSPCSWNRVKCDPITRSVTSLDFKSANLAGPFPTILCRLRSLNFI SFFDNAINGTLPPEISTCKSLVHLDLSQNFLTGTIPDTLPDIPNLKYLDLTGNNFSGEIPASLGRFEKLEVFAVVYNLLDGTIPPFLGNVSSLRMLNMSY NPFRTGRIPPEIGNLTNLEVLWLTECNLVGEIPSSLGRLKKLTDLDLAINGLVGELPSSLTELPNLVQLELYNNSLTGELPDGMGNLTALRLLDASMNQL TGNIPDGLCQLPLESLNLYENQFEGDLPASIGSSPNLYELRLFGNKLTGELPQNLGRNSPLRWLDVSNNLFTGPLPPALCSKGELEELLAIYNSISGELP AGLSECRSLTRVRLGYNKLSGEIPVNFWGLPHVSLVDLVSNSFSGEIAKTIAGASNLSMLILDKNGFTGPIPEEIGWVGSLVEFSANGNNFSSGLPGSLV NLKQLGKLDLHGNQISGEIPSGIDSWKKLNELNLGENRFSGEIPCSIGKLSVLNYLDLSGNNLDGEIPSSLQNLKLNQLNLSNNKLSGEIPPLYAKEIYK NSFLGNPGLCGEIPGLCAGKGRRNNRGEDYAWLLRSMFVLAAVVFVVGVVWFYVKYKNIDEVTKLAARPIDKSKWTLMSFHKLGFSEYEILDALDEDNVI GSGSSGRVYKVVLSNGEMVAVKKLWGSGGMMNKELFENGGDGFDAEVRTLGKIRHKNIVKLWCCCVTKDCKLLVYEYMVNGSLGDLLHGSKSGLLDWPTR FKIILDAAEGMSYLHHDCVPPIVHRDVKSNNILLDDQFGARVADFGLAKVVDSSAGKPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTG RLPVDPEFGEKDLVKWVRTTIDQKGVDHILDSKLDSCFKEEICRVLNIGILCTSHLPINRPSMRRVVKMLQEIGGDAREKAAAMKDGKLTPYYYEDGSDH GSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10015393 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	1.0	0.9627
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	3.5	0.8649
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	4.5	0.8788
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	4.6	0.8757
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	11.2	0.8632
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	25.4	0.7975
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	26.3	0.8016
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	27.6	0.8295
AT1G75580			SAUR-like auxin-responsive pro...		Lus10034511 [exp]	28.4	0.7991
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	30.2	0.8101

Compare expression of checked genes

Lus10015393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.