Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18425 271 / 1e-92 Protein of unknown function (DUF679) (.1) AT5G46090 262 / 4e-89 Protein of unknown function (DUF679) (.1) AT3G02430 198 / 5e-64 Protein of unknown function (DUF679) (.1) AT4G24310 194 / 2e-62 Protein of unknown function (DUF679) (.1) AT3G21550 144 / 3e-43 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT1G09157 144 / 1e-42 Protein of unknown function (DUF679) (.1) AT5G39650 141 / 2e-41 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT3G21520 137 / 4e-40 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G27370 123 / 6e-35 Protein of unknown function (DUF679) (.1) AT4G28485 110 / 2e-30 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013969 [exp] 425 / 4e-153 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 299 / 3e-103 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 286 / 1e-98 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 278 / 3e-95 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 278 / 4e-95 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 214 / 2e-70 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10015395 [exp] 207 / 2e-67 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10013970 [exp] 206 / 4e-67 AT4G18425 214 / 1e-70 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 195 / 1e-62 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058000 [exp] 300 / 3e-104 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 298 / 3e-103 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 221 / 6e-73 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 203 / 1e-65 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 185 / 1e-58 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 155 / 1e-47 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 154 / 1e-46 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 151 / 3e-45 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 148 / 2e-44 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 145 / 8e-44 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10015394 pacid=23160912 polypeptide=Lus10015394 locus=Lus10015394.g ID=Lus10015394.BGIv1.0 annot-version=v1.0 ATGGAGATCAAGGTAGCAGAGAAAGAAGGGAGGAGAATTGCCACGTCATCCAGCTGTAATGAAAGCAACATGATCAACAAGGAAGAAGAAGAAGAAAACG AAATTACCCTGCCTCTCCTGCAGCCAGAAGTTCTTCCCAACACGGAAACGAAAAGCATGGTTCAGAGAGCCATCAGCCAGACGTTCCAGAGCACTGCACA CTTGGCCAACCTTCTGCCAACCGGGACTGTTCTCGCGTTCCAGCTTTTGTCACCCGTGTTCTCGAACCAGGGCGAGTGTGACCCGGTTACCAGGTTCATG ACCGCCGGACTGGTGGCCATGTGCGGGCTTTCGTGCATTCTCTCGAGCTTCACGGACAGTTTCACGGATAAGGACGGATGTGTGTGCTACGGGTTTGCAA CTCCGAACGGGCTGTGGGTTATTGATGGCACGGGGAGTCTCCCACGGGAGCTGGCCGGGAAGTACAGCTTGAGGTTTATGGATTTTGTGCATGGGTTCAT GTCGCTGCTTGTGTTTGCAGCGGTTGCTCTATTTGATCAGAATGTGGTTAGCTGCTTCTACCCTGCGCCGTCGAAGGAGTGTCAGGAGATACTCACCGCT GTTCCGGTCGGGATCGGAGTTGTTTGTAGTATGTTGTTTGTTGTGTTCCCTACTAAGCGCCATGGGATTGGGTTTCCTCTCTCGACCAATAACTGA
AA sequence Show only first row Show all	>Lus10015394 pacid=23160912 polypeptide=Lus10015394 locus=Lus10015394.g ID=Lus10015394.BGIv1.0 annot-version=v1.0 MEIKVAEKEGRRIATSSSCNESNMINKEEEEENEITLPLLQPEVLPNTETKSMVQRAISQTFQSTAHLANLLPTGTVLAFQLLSPVFSNQGECDPVTRFM TAGLVAMCGLSCILSSFTDSFTDKDGCVCYGFATPNGLWVIDGTGSLPRELAGKYSLRFMDFVHGFMSLLVFAAVALFDQNVVSCFYPAPSKECQEILTA VPVGIGVVCSMLFVVFPTKRHGIGFPLSTNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18425			Protein of unknown function (D...		Lus10015394 [exp]	0	1
AT5G03260		LAC11	laccase 11 (.1)		Lus10026512 [exp]	5.8	0.9233
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	6.9	0.9543
AT1G10800			unknown protein		Lus10041270 [exp]	7.9	0.9523
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	12.1	0.9521
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	18.2	0.9519
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	18.3	0.9472
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	18.5	0.9445
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	19.0	0.9469
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	22.3	0.9444
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10035304 [exp]	24.2	0.8372

Compare expression of checked genes

Lus10015394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.