Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) AT5G46090 214 / 7e-71 Protein of unknown function (DUF679) (.1) AT4G24310 151 / 5e-46 Protein of unknown function (DUF679) (.1) AT3G02430 149 / 4e-45 Protein of unknown function (DUF679) (.1) AT3G21550 142 / 5e-43 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT1G09157 133 / 1e-38 Protein of unknown function (DUF679) (.1) AT3G21520 129 / 2e-37 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G39650 129 / 7e-37 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 105 / 1e-28 Protein of unknown function (DUF679) (.1) AT4G28485 0 / 1 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013970 [exp] 412 / 7e-149 AT4G18425 214 / 1e-70 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 224 / 3e-74 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 224 / 4e-74 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 197 / 2e-63 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 191 / 2e-61 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 188 / 3e-60 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 183 / 3e-58 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10033645 [exp] 170 / 3e-53 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 170 / 4e-53 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058000 [exp] 236 / 2e-79 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 233 / 7e-78 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 218 / 3e-72 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 147 / 1e-44 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.003G008600 [exp] 147 / 5e-44 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 139 / 1e-41 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 135 / 1e-39 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 133 / 1e-38 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 132 / 2e-38 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 119 / 1e-33 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10015395 pacid=23160870 polypeptide=Lus10015395 locus=Lus10015395.g ID=Lus10015395.BGIv1.0 annot-version=v1.0 ATGAAAGGTTCTCAACATCAAGATGAACGTCTGCTTTTCGACGATGAATCTCCTCCGGAGACACTGCAGACCAGAATAATACACAAAGTCATCGGCAAGA CATGTCAGACGACACAGGACTTAGCAAAGCACTTACCGACCGGAACGGTTCTCGTGTTCCAGCTTATGTCGCCCATTGTCACGAGAGAAGGTAACTGCAA CGACTCGGTGGCACTATACTTGACTGCCACGCTCGTGGCAGTCTGCGGACTCTCGTGTTTTCTTTTGTGCTTCACCGACAGCTTCAGGGATAAGAACGGC GTAGTTTGTTACGGGATTGTCACGTTTCGAGGCATATGGGTCATTGACACGACGGCTGCTGAGATTCCGCCGAAATTTGCAGAAAAGTACAGGTTGCAGT TGATTGATTTTGTGCATGGCTTCATGTCTGTGCTTGTGTTTGCAGTAGTTGTGCTGTTTGATAAGAATATGGTGCAGTGCTTCTGGCCAGCACCAACGGA TCAGGTCCAGAAGCTTCTCACGGCATTGCCCATTATGATCAGTGGGATCTGCGCCACCTTGTTTGCAGTTTTCCCCACCAAACGCCACGGAATCGGATTC CCCCTCTCTGCAAATTGA
AA sequence Show only first row Show all	>Lus10015395 pacid=23160870 polypeptide=Lus10015395 locus=Lus10015395.g ID=Lus10015395.BGIv1.0 annot-version=v1.0 MKGSQHQDERLLFDDESPPETLQTRIIHKVIGKTCQTTQDLAKHLPTGTVLVFQLMSPIVTREGNCNDSVALYLTATLVAVCGLSCFLLCFTDSFRDKNG VVCYGIVTFRGIWVIDTTAAEIPPKFAEKYRLQLIDFVHGFMSVLVFAVVVLFDKNMVQCFWPAPTDQVQKLLTALPIMISGICATLFAVFPTKRHGIGF PLSAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	0	1
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	1.4	0.7487
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	2.8	0.7336
AT4G34660			SH3 domain-containing protein ...		Lus10028785 [exp]	9.2	0.6576
AT3G09030			BTB/POZ domain-containing prot...		Lus10038089 [exp]	12.5	0.5912
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	14.4	0.6754
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	15.7	0.6764
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	16.2	0.6853
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	17.1	0.6902
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	20.4	0.6598
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	25.2	0.6967

Compare expression of checked genes

Lus10015395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.