Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46090 239 / 2e-80 Protein of unknown function (DUF679) (.1) AT4G18425 231 / 4e-77 Protein of unknown function (DUF679) (.1) AT4G24310 189 / 1e-60 Protein of unknown function (DUF679) (.1) AT3G02430 189 / 3e-60 Protein of unknown function (DUF679) (.1) AT3G21550 147 / 3e-44 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT3G21520 143 / 2e-42 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G39650 133 / 3e-38 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT1G09157 133 / 4e-38 Protein of unknown function (DUF679) (.1) AT5G27370 118 / 6e-33 Protein of unknown function (DUF679) (.1) AT4G28485 106 / 1e-28 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013971 [exp] 449 / 6e-163 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 329 / 3e-115 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 309 / 2e-107 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 286 / 3e-98 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 286 / 3e-98 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 208 / 7e-68 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 190 / 1e-60 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10015395 [exp] 174 / 1e-54 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 173 / 5e-54 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049000 [exp] 256 / 1e-86 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 255 / 2e-86 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 202 / 1e-65 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 194 / 5e-62 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 169 / 3e-52 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 150 / 3e-45 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 147 / 2e-44 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 144 / 2e-42 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 143 / 4e-42 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 139 / 2e-41 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10015396 pacid=23160956 polypeptide=Lus10015396 locus=Lus10015396.g ID=Lus10015396.BGIv1.0 annot-version=v1.0 ATGGAAACATTGGGGTCAGCAGGTAATACAATGGAGATCAACGTAGCAGAGAAGGAAGAAAGAATTACCCCCAGCTGCAATGACAGCAACAACAGTACAA GCCTCCTCACAGCAGTCCCCAGCAGCAAAAACAAAACAGCGATTCAGCAAGCTATCAACCAGACGTTCAAGAGCACAGCTCACCTCGCCAACCTTTTGCC AACTGGGACGGTTCTGGCGTTCCACCTTCTGGCACCTGTGTTCTCCAACGAGGGCAAATGTGTTTCCACCGGGAGGTACATGACCATGCGGCTCGTGACC CTTTGTGCGCTGTCCTGTATTCTATCAAGCTTCACTGACAGTTTCACGGACAAGGATGGTGTAGTGTCCTACGGATTCGCAACGTTGAATGGACTATGGA TTATTGATGGCCCGGGAACCCTTCCTCTAGAACATGCAGGGGCTTACAGGCTAAGGTGTTTAGACTTTCTGCATGCCTTGACGTCGCTACTTTTATTTGT AGCTGTTGCTCTGTTCGATGACAATGTGGTCAATTGCTTCTACCCATCGCCTTCTGAGGAGACTCAGCAGATCCTTAATGCTCTTCCAGTTGGGATTGGA GTTATTTGCAGTATGTTGTTTGCTCTATTCCCCAGCAAACGACACGGGATTGGTTTCCTTTCTCGGCCAGCTAAAACTACTGTGCCTGTAACACCATGA
AA sequence Show only first row Show all	>Lus10015396 pacid=23160956 polypeptide=Lus10015396 locus=Lus10015396.g ID=Lus10015396.BGIv1.0 annot-version=v1.0 METLGSAGNTMEINVAEKEERITPSCNDSNNSTSLLTAVPSSKNKTAIQQAINQTFKSTAHLANLLPTGTVLAFHLLAPVFSNEGKCVSTGRYMTMRLVT LCALSCILSSFTDSFTDKDGVVSYGFATLNGLWIIDGPGTLPLEHAGAYRLRCLDFLHALTSLLLFVAVALFDDNVVNCFYPSPSEETQQILNALPVGIG VICSMLFALFPSKRHGIGFLSRPAKTTVPVTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46090			Protein of unknown function (D...		Lus10015396 [exp]	0	1
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	2.8	0.9069
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10001848 [exp]	3.2	0.8788
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	6.9	0.8807
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	9.6	0.9063
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	12.2	0.8469
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	12.4	0.9000
					Lus10010481 [exp]	16.9	0.8955
AT5G62280			Protein of unknown function (D...		Lus10031701 [exp]	17.3	0.8557
					Lus10027774 [exp]	20.8	0.8486
					Lus10024084 [exp]	20.9	0.8882

Compare expression of checked genes

Lus10015396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.