Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46100 593 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 228 / 2e-67 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 210 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 214 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 210 / 6e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 211 / 1e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 202 / 7e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 195 / 1e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 192 / 7e-54 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 189 / 4e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013972 [exp] 777 / 0 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 232 / 7e-69 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 230 / 4e-68 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 219 / 2e-63 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 212 / 9e-63 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 208 / 2e-59 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 207 / 4e-59 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 206 / 8e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 207 / 2e-58 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 657 / 0 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 240 / 6e-72 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 229 / 6e-68 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 224 / 5e-67 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G148700 [exp] 222 / 2e-65 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 211 / 2e-62 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 215 / 4e-62 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 207 / 4e-60 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 208 / 5e-60 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 207 / 5e-60 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015397 pacid=23160868 polypeptide=Lus10015397 locus=Lus10015397.g ID=Lus10015397.BGIv1.0 annot-version=v1.0 ATGTTCAAATGGTCGAAAAAGCTCACAACGTCGCAAGTCCAGCAGCTGATACGAGCGGAGAAGGACGTCCACAAGGCATTGCGCATATTTGATTCGGCCA CAGCAGAGTACAGCAATGGATATAAGCACGATCACTCCACGTTCCACATAATGATCTCGAAGTTACTCTCGGTCAGCCAGTTCAAGGCAGCGGAGGAGAT GTTGAACAGGATGAAGATGGAGAATTGCGAGATAACGGAAGAGATTCTGCTATCCGTTTGCAGGGCGTACGGTCGTGTTCACAGGTCGGCTGACGCCGTC AGGGTTTTCCGTACAATGGAGGAGGCATATGGTTGTAAGCCTACGGAAAGATCGTTCATTACTGTGCTTTCCGTGCTGGTGGATGAGTCCCAGCTGAAGG AAGCGTTTGGGTTTTATAGATACATGAAGGAGATGGGTATTCGGCCAAGTGTTGTTTCTCTCAATATCTTGATCAAGGCACTTTGTAAGAACGGTGTCAC TGTAGATGCTGCTTTGAAGATATTTGTCGAGATGCCGAGTCGTGGATGTGTTCCTGATTTGTATACTTACGGCACGCTGATTAATGGGCTGTGTAAATGG GGTCGGATTTCTGAAGCGAAGGATTTGTTCCAAGAGATGGAGGGGAAAGGTTGTTCGCCATCTGTTGTTACGTACACTTCTTTGATACATGGGTTGTGCC AGTCTGAGAAGGTAGATGAAGCCATGGAATTATTTGAAAAGATGAAGAGCACTGGGGTAGAGGCAAATGTGTTTACTTTCAGTTCTCTGATGGATGGTCT TTGTAAGGTGGGTCGGTCTAGGCAAGCGTTCGAGCTACTGGGGTTCATGGTTGGGAAACGTCTTCAGCCTAATACAATTACTTATAGCACGTTGATCACT GGACTCTGCAAGGAAGGGAAACTGCCCGAGGCTGTGGAACTTCTTGACAGAATGAAGCTTCAGGGCTTGAAACCAGACGCTGGACTTTATGGGAAGGTCA TAATAGAGTTCTCTGCTGCAAGAAGGTTTCAGGAGGCTTCTAACTTCCTTGATGAAATGGTTCTTGGAGGAGTGAAACTAAGCCGTTTGACTTGGAGCCT TCATGTTAGGATCAATAATATGGTGGTGAAAGGCCTTGGTGCACATGGGGACCTAAATCGAGCGTTTAGGTTGTACTTAAGCATGAGGACTAGAGGAATA TCAATTGAAGTAGAGACTTCCCATGAACTTGCAAAGATTTTTGTTCAGAAAGGAGATCTTCAGAAAGCTGCTCGTGTTGTAGATGGTTTGGTGGCTGATG GTTGTGTTCCAGATGAAGGATTGTGGAACATAATGATGGATGGGTTCTGGGATCGAAGAAAGGCACGTGAAGCTTTTGAGTCGTTGTTCTGGTTATTGTG A
AA sequence Show only first row Show all	>Lus10015397 pacid=23160868 polypeptide=Lus10015397 locus=Lus10015397.g ID=Lus10015397.BGIv1.0 annot-version=v1.0 MFKWSKKLTTSQVQQLIRAEKDVHKALRIFDSATAEYSNGYKHDHSTFHIMISKLLSVSQFKAAEEMLNRMKMENCEITEEILLSVCRAYGRVHRSADAV RVFRTMEEAYGCKPTERSFITVLSVLVDESQLKEAFGFYRYMKEMGIRPSVVSLNILIKALCKNGVTVDAALKIFVEMPSRGCVPDLYTYGTLINGLCKW GRISEAKDLFQEMEGKGCSPSVVTYTSLIHGLCQSEKVDEAMELFEKMKSTGVEANVFTFSSLMDGLCKVGRSRQAFELLGFMVGKRLQPNTITYSTLIT GLCKEGKLPEAVELLDRMKLQGLKPDAGLYGKVIIEFSAARRFQEASNFLDEMVLGGVKLSRLTWSLHVRINNMVVKGLGAHGDLNRAFRLYLSMRTRGI SIEVETSHELAKIFVQKGDLQKAARVVDGLVADGCVPDEGLWNIMMDGFWDRRKAREAFESLFWLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10015397 [exp]	0	1
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	3.7	0.6629
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	8.5	0.6596
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10032653 [exp]	8.8	0.6255
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	9.5	0.6266
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	23.1	0.5898
					Lus10033638 [exp]	36.5	0.5441
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10023088 [exp]	43.1	0.4961
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	44.5	0.5999
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	65.7	0.5684
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	66.0	0.5557

Compare expression of checked genes

Lus10015397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.