Plant FIBer expression Database

Lus10015398 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013977
[exp]
105 / 8e-27 AT1G29010 52 / 1e-07 unknown protein
Lus10013951
[exp]
66 / 6e-13 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10015398 pacid=23160884 polypeptide=Lus10015398 locus=Lus10015398.g ID=Lus10015398.BGIv1.0 annot-version=v1.0
ATGTGTTCGACGAGCATCAGCAGCGGCACCGCCGGCGGCGGCGGAAGCGGAGAGAGTCATCAGACTCTCTTGTCTAAGAAGACAACAACAACGAAGAAGA
AACAGAGAGTTCCCAAGAGAGGCCCCGGTGTTGCTGAGCTGGAGAAGATCTTACGACAGCAACAGAATCGTCAACCCTCTTCCACCACCGCGGCGGCGGT
TACTTTCTCACCACCACCTCCGACGACGACGACGACGACGAGAACTCTGTTTTCGATCCCTTCTCCTCCGAGATCGCAACTTCACACCCTTTTGCCCCAC
CCCACGACGTCGTTTGAGAGCAGTTCCATCAGTAGTAGATCGGCTTTCCAGTTTCCATTCAACAATGGAGCTTCTTCTTTAGATCGTCAAATGCAGAGGA
TCCACCAACCTTCTTTCCCCACTATGATGAATTTCTTCCCAAGTTCTTCATCATCAGCAGCAGTAGAGCCCCCTTCAAACCAAATCTGCCAATTTCCAGA
CAAACCCAGCGTTTTTCTTAGCTCCCTTTTGTTTCTCAGAGGGAATTTGGTGCTATTGGGTTGTCCAACAACAATCAGAGATCAACATTCAATGTTCTAC
AATCCTCCTCCTCCAGTGCAGCAAAGGTCAGTGGAGGGTTATGAAGGGTTTAAGAACAAGCCGCCGCCTTTCTTGTACAGCTTCTTAGAAGAAGCAGGAA
TTAGCAGAAAAGTTGAATTGGATGGGGAAGAAGAAGGAGATGGGATTGATCTGAGATTGAAGCTGTGA
AA sequence
>Lus10015398 pacid=23160884 polypeptide=Lus10015398 locus=Lus10015398.g ID=Lus10015398.BGIv1.0 annot-version=v1.0
MCSTSISSGTAGGGGSGESHQTLLSKKTTTTKKKQRVPKRGPGVAELEKILRQQQNRQPSSTTAAAVTFSPPPPTTTTTTRTLFSIPSPPRSQLHTLLPH
PTTSFESSSISSRSAFQFPFNNGASSLDRQMQRIHQPSFPTMMNFFPSSSSSAAVEPPSNQICQFPDKPSVFLSSLLFLRGNLVLLGCPTTIRDQHSMFY
NPPPPVQQRSVEGYEGFKNKPPPFLYSFLEEAGISRKVELDGEEEGDGIDLRLKL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29010 unknown protein Lus10015398
[exp]
0 1
AT1G73210 Protein of unknown function (D... Lus10018267
[exp]
2.0 0.7980
AT3G10113 MYB Homeodomain-like superfamily p... Lus10031893
[exp]
7.1 0.8135
AT2G15220 Plant basic secretory protein ... Lus10026586
[exp]
12.7 0.7652
AT5G18670 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3... Lus10012804
[exp]
13.5 0.8351
AT4G38960 CO B-box type zinc finger family ... Lus10035472
[exp]
14.9 0.7868
AT1G02810 Plant invertase/pectin methyle... Lus10029866
[exp]
29.4 0.7235
Lus10031413
[exp]
31.4 0.6963
AT3G47090 Leucine-rich repeat protein ki... Lus10003071
[exp]
32.1 0.7629
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Lus10003262
[exp]
34.9 0.7528
AT3G14280 unknown protein Lus10003937
[exp]
35.0 0.7954

Lus10015398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.