Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 140 / 7e-38 HD HB-1 homeobox-1 (.1) AT5G44180 113 / 2e-28 HD Homeodomain-like transcriptional regulator (.1.2) AT4G03250 57 / 3e-09 HD Homeodomain-like superfamily protein (.1) AT1G17920 43 / 0.0001 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G40060 40 / 0.0007 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013979 [exp] 297 / 2e-102 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10025454 [exp] 154 / 7e-43 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10015325 [exp] 147 / 3e-40 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10017688 [exp] 119 / 1e-32 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 117 / 1e-31 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10039870 [exp] 120 / 5e-31 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 118 / 4e-30 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10027437 [exp] 45 / 3e-05 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 45 / 4e-05 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048675 [exp] 167 / 2e-47 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 155 / 3e-43 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 134 / 9e-36 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 126 / 6e-33 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.009G071700 [exp] 54 / 2e-08 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 54 / 3e-08 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10015400 pacid=23160895 polypeptide=Lus10015400 locus=Lus10015400.g ID=Lus10015400.BGIv1.0 annot-version=v1.0 ATGGACGCCAATTCCGAAGCAGACGATCATCATCGTGATCCTGATCCAGACGATGATTCCATGGCTGGTAACAAGAACAACGTCGCCGTTTCATCTTATT CTTCAGCTGCTGCAGCTGCAAATGGCAAGCCTAAACGCCAGATGAAGACTCCCTTCCAGCTCGAAACCCTAGAGAAGGCTTATTCACTGGAAACGTATCC ATCAGAGGCAACGAGGACGAAGCTGTCGCAGAAACTGGGATTATCAGACAGGCAGCTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGATAGGAAGGAG GATAAGAGGGATGGTAATGGAATGAAGAAGCCTCATGGTAAGGCTTCTTTGATGAAGTCTTCTTCTTCTCCTGTTGATGATTATCATCAGCTCAAGGCAG GGTCTGATGATGATCATCATCAGGTAGGGAGTGACGATGAATCGGAGCGTGGGTCGGGGTCTAGCCGGTATGTGGAGCCTAGTAGGAACAATGCGGCTTG TTTTGACGATGGTCATGTGCCTAGAAGGTACCATCAATCTTCGTCGACAATGTTGTCGGCTATGAAGGCTCGAGCTATTGCTTGTGTTGAGGCGCAGTTG GAGGAGCCGTTGAAGGAGGATGGGCCGGTTCTCGGGATCGAGTTTGATCCTTTGCCTCCTGATGCTTTTGGTGCTGCTATAGGTACTGCTTTCTTAGCTT AA
AA sequence Show only first row Show all	>Lus10015400 pacid=23160895 polypeptide=Lus10015400 locus=Lus10015400.g ID=Lus10015400.BGIv1.0 annot-version=v1.0 MDANSEADDHHRDPDPDDDSMAGNKNNVAVSSYSSAAAAANGKPKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQKLGLSDRQLQMWFCHRRLKDRKE DKRDGNGMKKPHGKASLMKSSSSPVDDYHQLKAGSDDDHHQVGSDDESERGSGSSRYVEPSRNNAACFDDGHVPRRYHQSSSTMLSAMKARAIACVEAQL EEPLKEDGPVLGIEFDPLPPDAFGAAIGTAFLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	2.4	0.8873
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	3.9	0.8300
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	4.2	0.8735
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	5.5	0.8733
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	6.6	0.8733
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	7.7	0.8551
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	8.7	0.8600
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	9.4	0.8440
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	14.5	0.8318
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	17.5	0.8457

Compare expression of checked genes

Lus10015400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.