Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28410 188 / 2e-58 unknown protein AT4G31340 49 / 2e-06 myosin heavy chain-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013982 [exp] 528 / 0 AT1G28410 201 / 1e-63 unknown protein Lus10026967 [exp] 59 / 9e-10 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10020166 [exp] 58 / 3e-09 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048500 [exp] 246 / 5e-81 AT1G28410 186 / 9e-58 unknown protein Potri.018G003700 [exp] 50 / 1e-06 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G276900 [exp] 50 / 1e-06 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015403 pacid=23160921 polypeptide=Lus10015403 locus=Lus10015403.g ID=Lus10015403.BGIv1.0 annot-version=v1.0 ATGCCGTCGGTAGCTCGTCTCTGTGTGTTTGCTTCCACTTTGGCATTGCTCTTAGCTATCATTTCCGAAGCTCAAGTAGTCGACCACCACAGCTTGATCG GTCAATTGAACGAAGCCAAGCTCAAGATCTCACAATTAGAATCGACTCTCGACCATGTCGTCGGCGACGTGGACGCTATCGATCGGAGACTTGAAGACGG AGAGAAGCGAATCGAGGAGTTGGAGAGGAAGCTCGTTGATCTCTATGCTGATATCAAGAAGTTCATGGATGAGATATCAGCTGGAGATAGGAAGATTACT GCGCTTGAAGAAGAGATACGCGTTCTGTGGACTATGCTGAGGAAGAACAACTTCGATATCCATGTCCTGAAAACTAAAGCAGAAGAATCTGAGGAGAGGC TGGATGGGCTTGCTTCCCATGTTGAGAAGATTACAGACGTTGTTTCAGAACGGTGGATCCAAATCCAACAGTTTGAGCAGGCTCTTCAACTCGTCGAAAT TAGGCTTATTAAGGCCAAAAGGGTAGCAAGGTATTCAAGCTGCACATTCTTGAAGTTGATGGATGATCTACACGGAAGATACATTCCAAGAACTCTTCGA TCGTTGAATCAATGGTTATTAGGCGATGCATCTACCATCAGACCATATGTTTCCTACGCCATGGAGCAGTTGAAGAGATTCTTCGCAACAGTCAAGGAGT CTCACTTCGAGTTGCAGAGCTTGATCAAACAGATAATGGAAGACTATGAACTCACGGCACAAATCGCAAACAGCGAAGTAGTGTTCTTCTTGGCGTCTGC TCTGATCGTGTTCCCTGTATTGAGTGCATGGTTACTCCTATCATCTCATCTACAATAG
AA sequence Show only first row Show all	>Lus10015403 pacid=23160921 polypeptide=Lus10015403 locus=Lus10015403.g ID=Lus10015403.BGIv1.0 annot-version=v1.0 MPSVARLCVFASTLALLLAIISEAQVVDHHSLIGQLNEAKLKISQLESTLDHVVGDVDAIDRRLEDGEKRIEELERKLVDLYADIKKFMDEISAGDRKIT ALEEEIRVLWTMLRKNNFDIHVLKTKAEESEERLDGLASHVEKITDVVSERWIQIQQFEQALQLVEIRLIKAKRVARYSSCTFLKLMDDLHGRYIPRTLR SLNQWLLGDASTIRPYVSYAMEQLKRFFATVKESHFELQSLIKQIMEDYELTAQIANSEVVFFLASALIVFPVLSAWLLLSSHLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28410			unknown protein		Lus10015403 [exp]	0	1
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	1.0	0.9078
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	2.2	0.8853
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	6.2	0.8966
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	6.3	0.9067
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	7.2	0.8872
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	11.7	0.8838
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	12.2	0.8823
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10007895 [exp]	13.2	0.8357
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	13.5	0.8723
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	14.3	0.8545

Compare expression of checked genes

Lus10015403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.