Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33855 99 / 8e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013983 [exp] 199 / 8e-66 AT2G33855 108 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048400 [exp] 157 / 1e-49 AT2G33855 126 / 8e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015404 pacid=23160876 polypeptide=Lus10015404 locus=Lus10015404.g ID=Lus10015404.BGIv1.0 annot-version=v1.0 ATGGAAGATCCGCTGCCGCCATCACCGTGGGAGCCGACAATCAACGCAGTAACCCACCTCCTGACCTCCCCAACAACCACCCCATCACTCCACTCCCAAT TCTTCATCGCCAAACAAATCCCCTGCTACCTCAACTGGGACTACCCACCAATCCTCTGCCGCCGATCCCCATCTCTCCTCCGTCAGTGGGGGATCTCCCT TTTCCTAAAACGTGCCTCCGGTTTGGCCCCGCCGCAGACCTCGTGGCGGTGCAAGTGCCCCTACCAGCAGCCGCCGCCGCTGACTCTGGCAAGAGGATTG GAGGAAGCGCGGTGGGGCGATGAGGAGATGAAGGAGCGTTTTAAGAAGAGAGCTAGGAGAAAGAGGATGTTTAGTAACGTACATCCTTTCTTCCCTGTTA TGATTCCTAACCTTTGTGCCTTCTTGTTGCTGCTATGGAACCCTTTCCCCGACGTCGTTGATGGGCCCCAGCTTCTCCGCCGGCGACGACCCTGA
AA sequence Show only first row Show all	>Lus10015404 pacid=23160876 polypeptide=Lus10015404 locus=Lus10015404.g ID=Lus10015404.BGIv1.0 annot-version=v1.0 MEDPLPPSPWEPTINAVTHLLTSPTTTPSLHSQFFIAKQIPCYLNWDYPPILCRRSPSLLRQWGISLFLKRASGLAPPQTSWRCKCPYQQPPPLTLARGL EEARWGDEEMKERFKKRARRKRMFSNVHPFFPVMIPNLCAFLLLLWNPFPDVVDGPQLLRRRRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33855			unknown protein		Lus10015404 [exp]	0	1
AT2G33855			unknown protein		Lus10013983 [exp]	2.8	0.9283
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	3.7	0.9193
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	4.5	0.9129
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10023383 [exp]	4.9	0.9077
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	5.2	0.9140
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	5.7	0.9044
AT4G39110			Malectin/receptor-like protein...		Lus10017478 [exp]	8.1	0.8857
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	10.4	0.9025
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10021297 [exp]	11.5	0.8887
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	11.5	0.9046

Compare expression of checked genes

Lus10015404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.