Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040835 [exp] 139 / 3e-42 ND 38 / 0.002 Lus10013984 [exp] 114 / 3e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015405 pacid=23160914 polypeptide=Lus10015405 locus=Lus10015405.g ID=Lus10015405.BGIv1.0 annot-version=v1.0 ATGGAATTCGATCATGTTTCCGAGGTTGAAGAGAAGGGTAATTACTGCTTACTCCATGATGCAATAGTAAGCAGCAAACTCAATGAATTGGGGGAAGATA TCTTGATAGAGATTCTATCTCGATCTCCTGTAAAAACTCTGTTGAAGCTCAAAGATTCGGTTGCTTTACTTGATCTGCCAGTTGGGAATCCTGCAGTGAA GTTTGATATGTGGGTTCTGGACGAAGAACAATGGTGTTGGGTCAAACAATCCACCGTTGTTCATTTGGAATATCATGAAATGGTGTTTGGAGATTTGACA GAAGGTAAGCTTGTGGTGTATGACCGCCATAGACATGCGTTGAGGTTGTTCGACCCTGCAACTAAACCCACTAAAACTTTACTTCAAAGTTGTGACTATG GCTTCCTTGATGATGGCGTGTTCGTCTACAAAGATAGCTTGGTGTCTGGGTGA
AA sequence Show only first row Show all	>Lus10015405 pacid=23160914 polypeptide=Lus10015405 locus=Lus10015405.g ID=Lus10015405.BGIv1.0 annot-version=v1.0 MEFDHVSEVEEKGNYCLLHDAIVSSKLNELGEDILIEILSRSPVKTLLKLKDSVALLDLPVGNPAVKFDMWVLDEEQWCWVKQSTVVHLEYHEMVFGDLT EGKLVVYDRHRHALRLFDPATKPTKTLLQSCDYGFLDDGVFVYKDSLVSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015405 [exp]	0	1
AT5G52975			Protein of unknown function (D...		Lus10001307 [exp]	1.0	0.7495
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	6.9	0.6632
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	13.6	0.6198
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	23.2	0.6295
AT5G16100			unknown protein		Lus10020810 [exp]	49.6	0.5557
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	73.5	0.5761
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	107.1	0.5288
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10018574 [exp]	117.0	0.5156
AT1G72590			3-oxo-5-alpha-steroid 4-dehydr...		Lus10018059 [exp]	123.8	0.5607
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10029577 [exp]	133.4	0.5166

Compare expression of checked genes

Lus10015405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.