Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33850 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030204 [exp] 84 / 6e-19 AT3G61920 59 / 4e-11 unknown protein Lus10010663 [exp] 52 / 2e-08 ND / Lus10018650 [exp] 44 / 0.0001 AT2G33850 45 / 5e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015700 [exp] 43 / 0.0002 AT1G03820 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015406 pacid=23160942 polypeptide=Lus10015406 locus=Lus10015406.g ID=Lus10015406.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCCACCTTCGCCGCCTTCCTCCTCATAACCTTCCTCTCCTCCTCCCTCGCCGTCCACGCCCGCCAGAGCCACTTCTTCAGCAAGGAAACTG ACAACAACGGGTACGGACTGCACGGCCACCAGACCCCCGAAACGACGGCGTACGAACAGGCCGCCGCCTCCACCGCCGGAGCCAATCTCCCCGCCGGCGA GTCTGCTGTCCCGGTCGCAAATGGCGGGAGCAACAACAACGGCAACGGCTACTTCAGCGAGAGCTACTTCAACAATGACAAGTACTACGGCGCCGAATCC GAGGATCTCGCCGCCACCACCGCCGGATCCAAGCTTGCCGCTGGCGAATCTGCTGTCCCGGTCGCAAATGGCGAGAGCAACAACAACGGCAACGGCTACT TCAGCAAGAGCTACTTCAACAACGACAAGTACTACGGCGCAGAATCCAAGGATTCCCCCGCCGGCGCCGAGTTCCTGAACTCCGACGACAGGTTCGCCGA TGAGTCTTCAACCGGCGTCGTCGAGAAACAAGAGTACAGCTCCAAGCTTTACAACAACGACGCTGAGAACGAGGCCTACAAGGGGAACAGCTTCACAACC GACGATCCGCAAAACGGCGTCGTCAGCAGTCTGTACGCCAACAACCTCAAGGAAGAAAAACAGGGGACGGAGCAGCAGTACGGGAACAGCTTTATGGACG AGGCCCAAAACGGCGTCGTTAGTAACTACAACGATCTGTACGGTAACAGTGACGCGCAAAAGTACGGAAATACCTTTAGTGACGAACCAACTAACGGTGT CACTAAAAATGCGTACGGAAGCAGCTTTAGCGACAGTTCCGTTGCTGACAACAAACAGGTTGTGAGACAGGGGATGAGCGATACGAGGTTTATGGCTGGT GGGAAGTACTACACGGAACTCAACGATCCGAGTCAGTATCAGGTCGACGGGATGAATGATCAGTACTACGGAAATTCGATGAACAAGAACAACAACCAGC AGGAGGCACAGTGGAACAGTTTCCAGAATCAGCAGCAGTATGATCCTTGA
AA sequence Show only first row Show all	>Lus10015406 pacid=23160942 polypeptide=Lus10015406 locus=Lus10015406.g ID=Lus10015406.BGIv1.0 annot-version=v1.0 MASPTFAAFLLITFLSSSLAVHARQSHFFSKETDNNGYGLHGHQTPETTAYEQAAASTAGANLPAGESAVPVANGGSNNNGNGYFSESYFNNDKYYGAES EDLAATTAGSKLAAGESAVPVANGESNNNGNGYFSKSYFNNDKYYGAESKDSPAGAEFLNSDDRFADESSTGVVEKQEYSSKLYNNDAENEAYKGNSFTT DDPQNGVVSSLYANNLKEEKQGTEQQYGNSFMDEAQNGVVSNYNDLYGNSDAQKYGNTFSDEPTNGVTKNAYGSSFSDSSVADNKQVVRQGMSDTRFMAG GKYYTELNDPSQYQVDGMNDQYYGNSMNKNNNQQEAQWNSFQNQQQYDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33850			unknown protein		Lus10015406 [exp]	0	1
AT2G04480			unknown protein		Lus10032584 [exp]	7.2	0.8905
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	11.0	0.8900
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10036531 [exp]	16.3	0.8771
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	17.9	0.8709
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	20.2	0.8039
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	23.3	0.8837
AT2G36570			Leucine-rich repeat protein ki...		Lus10021131 [exp]	24.5	0.8487
AT1G21510			unknown protein		Lus10018955 [exp]	27.2	0.8807
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10022725 [exp]	29.2	0.8034
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10029243 [exp]	30.4	0.8455

Compare expression of checked genes

Lus10015406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.