Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 169 / 3e-49 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 67 / 2e-12 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G49660 65 / 1e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 63 / 4e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 62 / 7e-11 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 62 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 61 / 4e-10 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G21540 61 / 5e-10 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 61 / 5e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 57 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013988 [exp] 266 / 2e-83 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016759 [exp] 112 / 9e-28 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022454 [exp] 109 / 2e-26 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10025732 [exp] 69 / 7e-13 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 66 / 5e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 66 / 7e-12 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 64 / 2e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 64 / 2e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 61 / 5e-10 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027200 [exp] 189 / 1e-56 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G093300 [exp] 107 / 3e-26 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 82 / 2e-17 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 68 / 7e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 67 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 67 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 66 / 5e-12 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.011G156900 [exp] 65 / 2e-11 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.001G173500 [exp] 64 / 4e-11 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.019G087200 [exp] 61 / 2e-10 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10015407 pacid=23160935 polypeptide=Lus10015407 locus=Lus10015407.g ID=Lus10015407.BGIv1.0 annot-version=v1.0 ATGGGAGAGAAATTATGGGGTAGTCTAGTCACCAACACTATCACCATGTGGTGTGTTTGTTTTGCCACCATTAATGGATCCTTGAAGCTCTCCCCACACT TGGGTTTTGGATATTGCACTCATGTTTTAGTTCCTACGTCGAGTAAGGCACGATTCGATTCGAGTAGTCGACCACATTACGGTAAGCCTCCTGTGGAGGT GAGGAGCTTCCTGCCAGAGCCGATAAAGCCTCTCGTTGCTAATAGCCAAGGAACGTACCTCGTCGGTGGAGGATTGTCTGGAAGCATTTATCTTTGGGAG GTTGCTACGGGTAGGTTGCTTAAGAAATGGCGTGGTCATTACAGGGGGGTTACCTGCTTGGTGTTCAATGATGATGGATCGCTTATCTTCTCTGGGTCAG AGGATGGTTCAGTTAGAGTCTGGTCACTAGTAATGCTTTTCGATGATCACCAGAGGGACCATGCGAGCAATCAGTATTTGCGTAGTTTCGCAGAGCATAC ATTGCGTATAACTGACTTGTCAATCGGGAACCTCTTGCTTGCCGGTTCAGAGGATGGCTTAATACGCGTCTGGAACCCCAAGACTTCTAACGTTATTCGC ATATTCAAACATGCTCCAGGTCCTGTGAACAATATACTAGTGACAAGGAGACCTCTGTACCTAAATCCTCGGATATCCTCTACCGTACACGGAATTCCAA GAGCGCAAAAATATTCGAGCTCGAATGATGGAACTGGAAGCACTGATCCGGTCGTTACCCTGCTGTCGTTTAACGATAACCGGCTAGAGGCTGCCTATGT CACGGGTCAAGTGATTGTCGATCAAATCAAAGAGCTTCAGCAAAAGGGTTCTTCAGCTGCGGCCGAAATGGAAGTGGAGAAGCTGAAACACGATCGTGGA GGTGGCTGA
AA sequence Show only first row Show all	>Lus10015407 pacid=23160935 polypeptide=Lus10015407 locus=Lus10015407.g ID=Lus10015407.BGIv1.0 annot-version=v1.0 MGEKLWGSLVTNTITMWCVCFATINGSLKLSPHLGFGYCTHVLVPTSSKARFDSSSRPHYGKPPVEVRSFLPEPIKPLVANSQGTYLVGGGLSGSIYLWE VATGRLLKKWRGHYRGVTCLVFNDDGSLIFSGSEDGSVRVWSLVMLFDDHQRDHASNQYLRSFAEHTLRITDLSIGNLLLAGSEDGLIRVWNPKTSNVIR IFKHAPGPVNNILVTRRPLYLNPRISSTVHGIPRAQKYSSSNDGTGSTDPVVTLLSFNDNRLEAAYVTGQVIVDQIKELQQKGSSAAAEMEVEKLKHDRG GG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10015407 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10007217 [exp]	5.3	0.8210
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	6.0	0.7809
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	9.4	0.7294
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	22.2	0.7710
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10032370 [exp]	26.5	0.7084
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	29.6	0.5905
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	31.1	0.7169
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	31.1	0.7127
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	42.1	0.7033
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	44.7	0.6950

Compare expression of checked genes

Lus10015407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.