Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16210 65 / 3e-11 F-box family protein (.1) AT3G06240 64 / 9e-11 F-box family protein (.1) AT4G12560 59 / 3e-09 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G13200 58 / 9e-09 F-box and associated interaction domains-containing protein (.1) AT3G49980 55 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT3G21120 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT3G23880 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT3G16740 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT3G23260 49 / 6e-06 F-box and associated interaction domains-containing protein (.1) AT3G08750 49 / 7e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013988 [exp] 482 / 6e-164 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023372 [exp] 424 / 2e-145 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10028961 [exp] 249 / 2e-77 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023370 [exp] 211 / 3e-65 ND 37 / 0.008 Lus10011203 [exp] 177 / 3e-52 ND 40 / 0.001 Lus10036360 [exp] 153 / 1e-43 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1) Lus10001105 [exp] 155 / 3e-42 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10007485 [exp] 122 / 3e-31 ND / Lus10027824 [exp] 124 / 5e-31 AT3G06240 78 / 2e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012200 [exp] 83 / 4e-17 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 81 / 2e-16 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.011G121200 [exp] 79 / 7e-16 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 77 / 3e-15 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G458400 [exp] 76 / 9e-15 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.005G114900 [exp] 76 / 1e-14 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 75 / 3e-14 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 73 / 9e-14 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 72 / 1e-13 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.008G006900 [exp] 66 / 1e-11 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10015408 pacid=23160948 polypeptide=Lus10015408 locus=Lus10015408.g ID=Lus10015408.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGCGAGAACACCGACAGCGGCGATGCTGGTCCTTACTTCACGGATGACATACTGTTCAACATCCTTCTGTGGCTTCCGATCGCGGCATGCA TAGCCCGATTCCGCTGCGTCTGCCGATCATGGCGGAAATTCCTCTCAGATCCGGAAATTATCCGCAAAATCATCCTGTCCCCAATCTCCGACGATCGTAA GAGCTTTCAGCTCCTCGTCACCGGAATTCAAGAATTCACGGGTACGGCCCCCACACTTTGCTCGGTCTACTCGTACGAAACCCTCCGCCCAATCTCAGAG GAGCCGATCACTCTGTTCGGCTGCGAGGAAGGCTATAGTTATAATTCGCAAGCGGTACTGGCGTGCTGCGATGGAATATTCTGTATAGCCAATACGAAGA GGATCCAAAATGGAAACTACATTCACAGCGTAGTTCTGTGGAATCCGGCCACCTCTGAAATGAAAATCGTCCCTCCGGGTCCTAATTACCACCCTTGTCG CTCTTCTCGTGTCTGCCTGGATGTTCGTGCGCAGCGCTTAGGTTTTGGGTACGATCCCAAAACCGATGACTACAAAATCGTCCGGGTTTTGGAATTCGAT GAAGGTGATCATGATGATCATGAGTACGCTTATGATCCTTCCGAGTTCTACCATGGTCCTACTCCCCTTATTTTCACAGAGGTTTATAGCTTGAGGAACG ATTCATGGAAGACGTTGAATGTGGATACGCATTTGGGGGAGGCTAATTTCTATGAGACACAGGTTCATCAAACCATACATCTCCATCAGCAGTGGGACAC ATCTCGAAACGAAAAATGCTACTGGTTTCGCTGCAAGCAAAACGAGGGAATTTCTGCTGCTTCTGCTGTGATCTCCTTCGACATGAGCACGGAAGTGTTT GAATCAATCAACATTCCCCAACCCACTGGCCTTGCACATTACGACGGGGACGATCGTGTTGACTACCCCGACGCGATTCACTATGATCGTGTTGGATATT ACACCTTTCCCAACCCCACCCGCCTTGCACAGGACGACGCGTGTCTCGGGAAGACCTGGGGCTGGGATGTCCAGTCCTGTTTCATGTTGAAGGATCGGGT GCTTATGGTAACTTACTGGGCTCGGTGGTACCAGCACATTATCGATGATCTTCCAAATAACGAGACGTGGCTAATGTTGAAATATGGAGATGCTGAATCT TGGACAAAACTATCTACTTGGCCGATACGAAAGTTTGGCTGCGGTGGTCGCCTTGAACTCTGGAAGAGTGGCACGTCCATTTGCGGGTTCAGAGAAATGG CCCTTTTTGAGGTTGAAACGGCCAAAAGGATCCGCGGAAATATTGAAATTGAAGGCACCATTGGGCAGTTCCAAGCTCACCTTTTCACTCCAACTCAAGT TTCCATCTCTCCACCGGCTTAG
AA sequence Show only first row Show all	>Lus10015408 pacid=23160948 polypeptide=Lus10015408 locus=Lus10015408.g ID=Lus10015408.BGIv1.0 annot-version=v1.0 MAGGENTDSGDAGPYFTDDILFNILLWLPIAACIARFRCVCRSWRKFLSDPEIIRKIILSPISDDRKSFQLLVTGIQEFTGTAPTLCSVYSYETLRPISE EPITLFGCEEGYSYNSQAVLACCDGIFCIANTKRIQNGNYIHSVVLWNPATSEMKIVPPGPNYHPCRSSRVCLDVRAQRLGFGYDPKTDDYKIVRVLEFD EGDHDDHEYAYDPSEFYHGPTPLIFTEVYSLRNDSWKTLNVDTHLGEANFYETQVHQTIHLHQQWDTSRNEKCYWFRCKQNEGISAASAVISFDMSTEVF ESINIPQPTGLAHYDGDDRVDYPDAIHYDRVGYYTFPNPTRLAQDDACLGKTWGWDVQSCFMLKDRVLMVTYWARWYQHIIDDLPNNETWLMLKYGDAES WTKLSTWPIRKFGCGGRLELWKSGTSICGFREMALFEVETAKRIRGNIEIEGTIGQFQAHLFTPTQVSISPPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	0	1
AT1G10800			unknown protein		Lus10041270 [exp]	7.0	0.9429
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031890 [exp]	10.0	0.8771
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027837 [exp]	12.5	0.9165
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	13.0	0.9333
AT3G13480			unknown protein		Lus10013407 [exp]	14.8	0.9204
AT3G55420			unknown protein		Lus10005165 [exp]	17.0	0.9026
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	17.0	0.9316
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	21.6	0.9275
AT5G59350			unknown protein		Lus10016568 [exp]	23.8	0.9225
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	23.9	0.9260

Compare expression of checked genes

Lus10015408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.