Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39780 78 / 5e-17 RNS2 ribonuclease 2 (.1.2) AT2G02990 72 / 5e-15 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14220 71 / 1e-14 Ribonuclease T2 family protein (.1) AT1G26820 70 / 2e-14 RNS3 ribonuclease 3 (.1) AT1G14210 57 / 1e-09 Ribonuclease T2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023371 [exp] 110 / 3e-29 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1) Lus10035882 [exp] 83 / 4e-19 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10035881 [exp] 83 / 4e-19 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10003110 [exp] 83 / 6e-19 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10012823 [exp] 70 / 2e-14 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 69 / 4e-14 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10027978 [exp] 66 / 6e-13 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10041084 [exp] 61 / 1e-10 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10022385 [exp] 60 / 2e-10 AT1G26820 92 / 2e-21 ribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174400 [exp] 82 / 1e-18 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.008G086800 [exp] 73 / 2e-15 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.008G086700 [exp] 66 / 5e-13 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.013G134400 [exp] 66 / 2e-12 AT2G02990 82 / 4e-18 ribonuclease 1 (.1) Potri.010G168700 [exp] 64 / 5e-12 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.010G168600 [exp] 43 / 3e-05 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10015409 pacid=23160897 polypeptide=Lus10015409 locus=Lus10015409.g ID=Lus10015409.BGIv1.0 annot-version=v1.0 ATGACGATCATACTCCGCCTCCTCATCCTGACTGTCATTTTCAATCAGGCCAGATGCTTCGATTACTACGTTCTTGCGTTGCAATGGCCTAACGGAGTTT GCGCTGCTGCGCCAGGACGTTGCCCTGGATCAACAATCCCCTACTACTTCACCGTCCACGGGCTCTGGCCTGCCAATACTTATCCCTCAGCACCACCACT CCCTGGATTCCCGTGGCTAATTGAAGATTTCATAACCGACATCAATGACCAGCCGCTGTTACAAAACATGAATGCTTACTGGCCGAACCTGTATAACCCT ACAGCTCCTTTCGGATTCTGGTACAGAGAATGGAACCGCCACGGAACTTGTCCTGGACAATACGTCGCTGCACCGCTTCCTTACTTTCAGCTAGCTCTCA GTCTCTTTTTGGCACACGATAACCCACTGACTACACTAGCCCATGCCGGGATAGTGCCAAGCAACGACATCTACGTATGGACATATGCGAGAGTGCTCCG ACAACGACTTGGTGGGAATCCCACCCTAATCTGTGACAAGAATCAGCTCGTCCAGAACACATACATTCTCAAACAGGTACAGTTCTGCTTCTCTGCCAAT ACCCCTACCCCAACTCGATATCCATGTACACCGAGACAGTCATCCTTAGCTACGTGCGGAGGTGCACTCGGGAAAGTCAACTTCCTCCGAGCCTAG
AA sequence Show only first row Show all	>Lus10015409 pacid=23160897 polypeptide=Lus10015409 locus=Lus10015409.g ID=Lus10015409.BGIv1.0 annot-version=v1.0 MTIILRLLILTVIFNQARCFDYYVLALQWPNGVCAAAPGRCPGSTIPYYFTVHGLWPANTYPSAPPLPGFPWLIEDFITDINDQPLLQNMNAYWPNLYNP TAPFGFWYREWNRHGTCPGQYVAAPLPYFQLALSLFLAHDNPLTTLAHAGIVPSNDIYVWTYARVLRQRLGGNPTLICDKNQLVQNTYILKQVQFCFSAN TPTPTRYPCTPRQSSLATCGGALGKVNFLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	4.4	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	4.5	1.0000
AT2G40070			unknown protein		Lus10008717 [exp]	6.2	1.0000
					Lus10010414 [exp]	6.9	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	7.7	1.0000
					Lus10010663 [exp]	7.7	1.0000
					Lus10014229 [exp]	8.9	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	9.5	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	10.0	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10015409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.