Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024400 [exp] 40 / 0.0002 AT5G02440 88 / 1e-21 unknown protein Lus10025345 [exp] 39 / 0.0005 AT5G02440 67 / 6e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048201 [exp] 70 / 6e-16 ND / Potri.011G057400 [exp] 68 / 4e-15 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015410 pacid=23160890 polypeptide=Lus10015410 locus=Lus10015410.g ID=Lus10015410.BGIv1.0 annot-version=v1.0 ATGAGCCTTAGGCTGAGACTAACCGAGATCAGCAACAACAACAACCGTACAGCTCAACAAACAGCATCAAACCAACCCAATCATAACAATAACTTGTTCA TAACATCCTCAAGCTTCTCCTCCTTCTCCTCCTCCAATCTCGACACCGAGTCCACGGCATCGTTTTTCCAGGACAACAGCGTATCGTTCGGGAGGCTAAT TGGGTATCGATCAGCAGCTGAACATCACAGAGGCAGCAATATGAATAATAACGGCTACTTCACAAGAAGAAGTATTGGAAGATCGGCGGAGGCGGCGGCT GTAGTGAGGAGTAATGATGCAGATTGTGGAGATGAGATAGTGAGAATGTCGTCTGAAGGACAGCAAGGGATCTGCATTCCTTTGATACTTAGTACCATTG ATAAGATCAACAGGAGAAAGGATCGGTCCAATTGA
AA sequence Show only first row Show all	>Lus10015410 pacid=23160890 polypeptide=Lus10015410 locus=Lus10015410.g ID=Lus10015410.BGIv1.0 annot-version=v1.0 MSLRLRLTEISNNNNRTAQQTASNQPNHNNNLFITSSSFSSFSSSNLDTESTASFFQDNSVSFGRLIGYRSAAEHHRGSNMNNNGYFTRRSIGRSAEAAA VVRSNDADCGDEIVRMSSEGQQGICIPLILSTIDKINRRKDRSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015410 [exp]	0	1
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	3.5	0.9656
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	3.9	0.9660
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	4.2	0.9571
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	4.9	0.9741
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	7.5	0.9662
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	8.1	0.9667
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	9.8	0.9665
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10024378 [exp]	12.0	0.9558
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	16.1	0.9569
					Lus10011724 [exp]	16.5	0.9646

Compare expression of checked genes

Lus10015410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.