Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28440 185 / 8e-61 Nucleic acid-binding, OB-fold-like protein (.1) AT2G33845 185 / 2e-60 Nucleic acid-binding, OB-fold-like protein (.1) AT1G23750 177 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 175 / 4e-57 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 171 / 2e-55 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013989 [exp] 293 / 2e-103 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 178 / 4e-58 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 176 / 2e-57 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 175 / 4e-57 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 172 / 5e-56 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 172 / 9e-56 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 171 / 2e-55 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114800 [exp] 198 / 8e-66 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 192 / 1e-63 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 189 / 1e-62 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 187 / 5e-62 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.010G041000 [exp] 187 / 7e-62 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 186 / 3e-61 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015411 pacid=23160938 polypeptide=Lus10015411 locus=Lus10015411.g ID=Lus10015411.BGIv1.0 annot-version=v1.0 ATGGCGACCACAACGAACTCGAACCAACAGCAGCAGCAGATGAGGTCAAGCAGCGATGGAGCAACGGCGGCGCCGGCGGGGAACAGAGTGGTGGAGAAGC GGAAGCCAGTGTTCGTGAAAGTGGAGCAGCTGAAGCCCGGAACCCAGGGCCACAACCTGATCGTTAAGGTCTTGTCCTCCAACGCCGTCGTCCAGCAGCA ACAAGGAAGAACCGCCGCGCCTCAGCGCTTCCGCAACACCAGAATCGCCGAGTGCCTCATCGGCGACGAGACCGGGTCCATCCTCTTCACCGCTCGAAAT GATCAAGTCGACATGGTGAAGCCAGGGACCACGATCATCATCCGGAACTCGAGGATTGCCATGTTCAAGGGTTCGATGAGGCTCACTGTTGACAAATGGG GGCGCATTGAAGTGACCGAGCCTGCCAAGTTTGCAGTCAACGAGGATAACAATCTTTCGCTGGTGGAATACGAACTGGTGACCGTTGCTGCAGATGATTA G
AA sequence Show only first row Show all	>Lus10015411 pacid=23160938 polypeptide=Lus10015411 locus=Lus10015411.g ID=Lus10015411.BGIv1.0 annot-version=v1.0 MATTTNSNQQQQQMRSSSDGATAAPAGNRVVEKRKPVFVKVEQLKPGTQGHNLIVKVLSSNAVVQQQQGRTAAPQRFRNTRIAECLIGDETGSILFTARN DQVDMVKPGTTIIIRNSRIAMFKGSMRLTVDKWGRIEVTEPAKFAVNEDNNLSLVEYELVTVAADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	0	1
AT4G22320			unknown protein		Lus10032566 [exp]	1.7	0.8803
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	2.0	0.8687
AT4G14615			unknown protein		Lus10041178 [exp]	2.8	0.8523
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	3.5	0.8597
AT2G28105			unknown protein		Lus10021424 [exp]	4.2	0.8352
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	4.9	0.8070
AT3G15420			Transcription factor TFIIIC, t...		Lus10001401 [exp]	5.1	0.7709
AT3G26350			unknown protein		Lus10011406 [exp]	5.3	0.8301
AT2G25720			unknown protein		Lus10032479 [exp]	5.5	0.7912
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	5.7	0.8244

Compare expression of checked genes

Lus10015411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.