Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26990 108 / 1e-28 Drought-responsive family protein (.1) AT3G05700 106 / 4e-28 Drought-responsive family protein (.1) AT3G06760 98 / 9e-25 Drought-responsive family protein (.1.2) AT1G56280 83 / 3e-19 ATDI19 drought-induced 19 (.1.2) AT5G49230 79 / 7e-18 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT4G02200 69 / 5e-14 Drought-responsive family protein (.1.2.3) AT1G02750 67 / 4e-13 Drought-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013990 [exp] 278 / 2e-95 AT5G26990 78 / 1e-17 Drought-responsive family protein (.1) Lus10031467 [exp] 114 / 9e-31 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10037819 [exp] 97 / 2e-24 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10013420 [exp] 76 / 2e-16 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10002441 [exp] 71 / 1e-15 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10015214 [exp] 72 / 5e-15 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10001462 [exp] 72 / 6e-15 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10010305 [exp] 65 / 2e-12 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10017956 [exp] 63 / 2e-11 AT5G26990 74 / 8e-15 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057200 [exp] 262 / 8e-89 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.013G011200 [exp] 125 / 2e-35 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.005G020900 [exp] 120 / 2e-33 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.010G000800 [exp] 105 / 1e-27 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 103 / 3e-27 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 76 / 1e-16 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.012G086500 [exp] 75 / 3e-16 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2) Potri.019G027300 [exp] 70 / 2e-15 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.002G200500 [exp] 72 / 5e-15 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10015412 pacid=23160899 polypeptide=Lus10015412 locus=Lus10015412.g ID=Lus10015412.BGIv1.0 annot-version=v1.0 ATGGATTCGAATTTCTGGACGTCGAGGATCGCCGCCGCGAAGCGGCAGTACACGTTGAACCACCATAACCAGACCTCCCACCTGGATCGGTTGAGCGTTG AGGAGTTCGAGGTGGAGGAGGATGTCCGGCCGGACATCCCTTGCCCTTACTGTTACGAGGATTTCGACGTCTTGTCTCTCTGTTCGCATCTGGAGGATGA GCATCCTTGCGAGTCCAGAGTCACCGTTTGTCCTGTCTGCTCTATTAAGGTTGCTAGGGACATGCTTAGTCATATAACGCTACAACATGATTACTTGCAG AGACGCCGCAGGCTGCGTAGAGTTGCAATACCAAACAGTCAAACACTGTCCCTTCTTGGACAGGATCTACGCGAGGCTCATCTGCAAATTCTGCTAGGTG GTGGTGATGTTGGAAGTGGATATAGATTATCATCATCATCGAGCAATGCTAATGTCTCGACGACTTCTGCAGCAGCTACTGATCCTTTCCTTTCGTCGCT CATCTTGAATTTCCCATCCTCCGAAGTAGAAGAGATTTCGAAATCTGCCGTGACCGGTTCAGATGACTCCTTTGTAAAGAGCAGCAGTGCTTCTCCCTAC GCATGGAGGTCAAGCTTTGATCCGTCGCTGAGCCCGGAAGAACGGGAGAAGAGGATGAAGCAAGCTGCTGGGAAAGCTGGTTTTGTGCAGACTCTAGTTC TGTCAACTTTGTCACTAGACTGA
AA sequence Show only first row Show all	>Lus10015412 pacid=23160899 polypeptide=Lus10015412 locus=Lus10015412.g ID=Lus10015412.BGIv1.0 annot-version=v1.0 MDSNFWTSRIAAAKRQYTLNHHNQTSHLDRLSVEEFEVEEDVRPDIPCPYCYEDFDVLSLCSHLEDEHPCESRVTVCPVCSIKVARDMLSHITLQHDYLQ RRRRLRRVAIPNSQTLSLLGQDLREAHLQILLGGGDVGSGYRLSSSSSNANVSTTSAAATDPFLSSLILNFPSSEVEEISKSAVTGSDDSFVKSSSASPY AWRSSFDPSLSPEEREKRMKQAAGKAGFVQTLVLSTLSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	0	1
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	5.4	0.8929
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	13.2	0.8433
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	17.9	0.8913
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	17.9	0.8373
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	20.1	0.8781
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	20.1	0.8665
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	20.3	0.8429
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	22.9	0.8798
AT1G78922			unknown protein		Lus10035715 [exp]	25.1	0.8154
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	26.7	0.8807

Compare expression of checked genes

Lus10015412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.