Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 604 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 601 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 563 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 559 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 558 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 555 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 541 / 4e-179 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 529 / 5e-175 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 525 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 521 / 1e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 1760 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 590 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 583 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 576 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 575 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 573 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 558 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 555 / 0 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007806 [exp] 546 / 2e-180 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 1251 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 647 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 607 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 605 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 593 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 586 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 571 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 570 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 550 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 544 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015414 pacid=23160907 polypeptide=Lus10015414 locus=Lus10015414.g ID=Lus10015414.BGIv1.0 annot-version=v1.0 ATGAACTTCTGCCTCTATCCTTCCCTCCGACGGAAATCCCTTCACCGGCGACTATCTATTCCGGCGACTAATCCTTACAACCCCACTCTCTCTTCCTCCC TAAGATTTATCAACTTCCCGGATACATCCAACGAATTCATCCACTACCGACACTTCACAACAACAACTTCTACTCCCGAAGGGAAGAACAGCCCAGAGCA ATCTCTGGCGTCACTCTCCGCGCGCTACTCCAGTCTTCTATCACAATGCACCGCTGCGAAATCGTTAGCTCCAGCGCTGGTAGTTCATGCCCGTCTGATC AAGTTCGGAATCCAGCTGGACACGAGGCTGAGGAACCTGGTGGTTAACGTGTACTCGAAGTGCAGGGCATTTGGCTATGCACGCAAGGTGATCGACGAAA TTCCTGAACCAGATTTAGTAGCTTGGTCTGCTTTGATTTCGGGATATTCGCAGAATGGGTACGCCAAGGAAGCGATTCGTACCTTTAAGGAGATGCATTC GTTGGGAATCAAATGTAACGAGTTTGCTTTCCCCAGTGTGTTCAAGGCTTGTACTTTGACTGATAATTTGCAGCTTGGAAGGCAGGTCCATGGAAATGTG GTGACTACTGGGTTTGAGAATGATGAGTTTGTTTTGAATAGTATGGTTGTCTTGTATGCGAAATGTGGGGAGATTTCGGATTCGAGAAGAGTGTTTGAAG CGATTCCTTGTATGAGTGTTGTGTCTTGGAATGCCTTGTTGTCTTCCTACGTGCAGCGTGATTCGTTTATGGAGGCATTGGAGTTGTTTCACGACATGAT TCTGACGAAACCCGAAATAAGGCCTAATGAGTTCAGTTTATCGACTATGATAAATGCCTGCACGGGATTGGAAGACAGTGGCCAAGGTAGGAAAATCCAT GGATTTTTTATAAAGCTTGGGTATGACTTGGATTTATTCTCTTCTAATGCTCTTGTTGATATGTATGCAAAGCTGGGGAATCTCGAAGATTCCATGAGGG TCTTCAATAGCATTGCGAAACCCGACATTGTTTCCTGGAACGCCGTGATTGCCGGTTGTGTTCTTCTCGAGCGGCATTATTGCGCATTGGAGTTGTTTAG GAAGATGTGTGTGTCGAGTATATCGCCAAATACGTTTACTTTATCCAGCGTTCTTAAAGCTTGCGCTGGAGAAGGACTAGGGGAGCACGGGAGAGAGCTG CATGGGAATTTGTTGAGGAGGGATTTGGGAAAAGATACATTCTTGGGAGTTGGACTTGTGGATTTGTATGCCAAGAGTGGTTATATGGATTTGGCAAGGT TAGTATTTAACTTAATTCCGGAAAAAGACTTGATCTTGTGGAATGCTGTGATCTCTGGATACTCGCTTAATGGCGAAGATGTAGAAACGGTTTCTCTTTT CCCTTTGTTGTACCAGGAAGGAGTAGGATTCAACCAGACAACTTTGTCAACTGTTCTTAAATCAACAGCTAGCTTGCAGGCTACCCCAATTTGCAGGCAG ATACACACACTTAGTTTGAAATCTGGGTTTGAATCCGACAGTTATGTCGTAAACAGCCTTGTGGATGCTTATGGGAAATGCGAACAGACAGAAGATGCAT TAAACGTGTTTAGAGAAAGCCCAACTCTAGATTTGTTGGCTTTTACATCCATGATAACTGGTTATTCCCAAGGTGGGCAAGGTGAAGAAGCTTTTAAGCT CTATCTGGATATGCAGAGCCTTGGTATAAAGCCAGATGCTTTTGTTTTCAGCTCTCTTTTGAATTCCTGTGCGAACTTGTCTGCATATGAACAGGCAAAG CAAGTTCATGTTCAAGTACTGAAATTTGGATTCATGAACGATGTTTTCGCTGGGAATTCTCTCGTCCATACGTACGCGAAATGTGGATGCATAGACGACG CTGAGCAAGCTTTCCACGAGATTACCGAGCGAAGTATCGTCTCATGGTCCGCACTCATCGGAGGAATGGCTCAACATGGACATAGAAGACAAGCCCTCGA ATTATTCGACCGGATGATTGAAGAAGGTGCTGTTTCTCCGAATCATATAACTCTTGTCAATGTCCTTGCGGCCTGCAACCACACAGGGTTAGTAGACGAC GCGAAAAGATACCTCTTTTCAATGGAGGAGTTATTCGGCATCAAACCGACGCAAGAACACTATGCCTGCATGATTGACATCCTCGGCCGAGCAGGGAAGC TCGAAGAGGCTATGGAGTTAGTAAACACAATGCCATACGAAGCGAATGCATCGGTATGGGGGGCACTCCTCGGTGCTGCAAGAATACATAAAAATATCGA CTTGGGACGAAAAGCTGCAGAGATGCTACTTGTTCTTGAGCCAGAGAAATCAGGCACCCATATACTGCTAGCGAATATCTACTCATCGGCCGGAATGTGG GAAGGTGCAGCCAAGATACGGAAGTTTATGAAGGATAGTAGAGTTAAAAAGGAACCCGGGATGAGCTGGATGGAGATCAAGGACGAAGTTCACACCTTTA TAGTTGGGGACAGAAGCCATCCTAGAAGCGATGAAATCTACAGAAAGCTTGAAGATTTGAGGGAGCCTCTGAAGAAGGCTGGATATGTTCCTATGGTGGA GACGGAGCTTCACGATGTCGATGTGAGCGAAAAGGCAAAGCTTTTGTCCCACCATAGCGAGAAACTCGCTGTGGCTTTCGGGTTGATCGCTACTCCTTCC GGTGCTCCCATTAGGGTGAAGAAGAACTTGAGGGTTTGCTTGGATTGCCATACTGCACTGAAGCTCGTCTCAAAAATCTCGTCCAGGGAGATCGTTGTTA GGGACATTAACAGGTTCCATTGCTTCCGAGATGGGGTGTGTTCTTGCGGCGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10015414 pacid=23160907 polypeptide=Lus10015414 locus=Lus10015414.g ID=Lus10015414.BGIv1.0 annot-version=v1.0 MNFCLYPSLRRKSLHRRLSIPATNPYNPTLSSSLRFINFPDTSNEFIHYRHFTTTTSTPEGKNSPEQSLASLSARYSSLLSQCTAAKSLAPALVVHARLI KFGIQLDTRLRNLVVNVYSKCRAFGYARKVIDEIPEPDLVAWSALISGYSQNGYAKEAIRTFKEMHSLGIKCNEFAFPSVFKACTLTDNLQLGRQVHGNV VTTGFENDEFVLNSMVVLYAKCGEISDSRRVFEAIPCMSVVSWNALLSSYVQRDSFMEALELFHDMILTKPEIRPNEFSLSTMINACTGLEDSGQGRKIH GFFIKLGYDLDLFSSNALVDMYAKLGNLEDSMRVFNSIAKPDIVSWNAVIAGCVLLERHYCALELFRKMCVSSISPNTFTLSSVLKACAGEGLGEHGREL HGNLLRRDLGKDTFLGVGLVDLYAKSGYMDLARLVFNLIPEKDLILWNAVISGYSLNGEDVETVSLFPLLYQEGVGFNQTTLSTVLKSTASLQATPICRQ IHTLSLKSGFESDSYVVNSLVDAYGKCEQTEDALNVFRESPTLDLLAFTSMITGYSQGGQGEEAFKLYLDMQSLGIKPDAFVFSSLLNSCANLSAYEQAK QVHVQVLKFGFMNDVFAGNSLVHTYAKCGCIDDAEQAFHEITERSIVSWSALIGGMAQHGHRRQALELFDRMIEEGAVSPNHITLVNVLAACNHTGLVDD AKRYLFSMEELFGIKPTQEHYACMIDILGRAGKLEEAMELVNTMPYEANASVWGALLGAARIHKNIDLGRKAAEMLLVLEPEKSGTHILLANIYSSAGMW EGAAKIRKFMKDSRVKKEPGMSWMEIKDEVHTFIVGDRSHPRSDEIYRKLEDLREPLKKAGYVPMVETELHDVDVSEKAKLLSHHSEKLAVAFGLIATPS GAPIRVKKNLRVCLDCHTALKLVSKISSREIVVRDINRFHCFRDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	0	1
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	1.4	0.8560
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	4.0	0.8208
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	15.9	0.7991
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	16.0	0.8096
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	18.8	0.7710
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10010424 [exp]	19.5	0.8198
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	20.0	0.8251
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	20.6	0.8435
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	32.5	0.8184
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	40.0	0.7695

Compare expression of checked genes

Lus10015414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.