Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28340 848 / 0 AtRLP4 receptor like protein 4 (.1) AT1G25570 251 / 8e-74 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT3G05990 136 / 7e-34 Leucine-rich repeat (LRR) family protein (.1) AT2G14510 127 / 3e-30 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 125 / 2e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 122 / 2e-28 Leucine-rich repeat protein kinase family protein (.1) AT1G51890 119 / 1e-27 Leucine-rich repeat protein kinase family protein (.1.2) AT3G46400 118 / 4e-27 Leucine-rich repeat protein kinase family protein (.1) AT1G07560 117 / 4e-27 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 117 / 6e-27 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013994 [exp] 1140 / 0 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 892 / 0 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10041488 [exp] 287 / 4e-87 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 282 / 3e-85 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10002456 [exp] 114 / 2e-26 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10025849 [exp] 108 / 5e-24 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10010528 [exp] 94 / 3e-20 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10019237 [exp] 93 / 4e-19 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10027903 [exp] 88 / 5e-18 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056800 [exp] 896 / 0 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 875 / 0 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.010G129300 [exp] 266 / 1e-79 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 258 / 1e-76 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.010G090800 [exp] 129 / 2e-31 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G150200 [exp] 125 / 4e-30 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 118 / 3e-27 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 108 / 1e-24 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G242700 [exp] 94 / 1e-19 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G043700 [exp] 80 / 2e-15 AT3G46280 216 / 3e-63 protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10015417 pacid=23160922 polypeptide=Lus10015417 locus=Lus10015417.g ID=Lus10015417.BGIv1.0 annot-version=v1.0 ATGGCACCCATTAGCAAGAGCAAGGTTGCTCTGGATGTTGCTGCGGATAGGGAAACAGGGGAGTCTCTGTCCTTTGCTGGGTTTATATCTGTTCAAGATC AGGAACCAAAGAAGTCTTATGATCCTCGCAAAATGAACAAGCTGGATGAACAAGAGTTCGAGTTCAGATGTACCGTACCGGCGCCAGTTGGCAAATCGAA TCGTAGAACGAGGAATCATGAAAGACGGAAGAGGTCGGCTGCGGCTGGGAGTGGGAGGAGATCATTCTTCAGGTCGTTCTTTTGGCCGTGCAAGGAATGC CGTGTGAAGAACTCTGTTGTTGAACCAGGTGTTCAGGGACCAGTCACGCCATGGATAATAAGGATAAGCTGCGGGTCTCGAGTGAACGTGAACACCGAGC CAACGAACACGAGATGGTACAAGGATTTCGCGTACACGGGAGGGATTCCATCGAACCGAACGACTCCTCCAAGCTTCCTTACTCCTCCGCTCAAGACGCT TCGTTACTTCCCATTATCAGCAGGTCCCAACAATTGCTACAATATTCATAGAGTTCCCAAGGGGCATTACACCGTGAGGGTATTCTTCGGTTTGATCGAT CATCCTGACTTCAACGACGAGGCCTTGTTCGATGTATCGGTGCAAGGCACGCAGGTTTACTCATTGCAGTCGGGGTGGAGCGGTCAGGATGACCAGACAT TCGTTGAAGCTCAGGTGTTTCTCTTGGATGGCGCGTCTTCTATCTGTTTCCATAGTACAGGACATGGGGATCCGGCGATTGTTTCGATTGAGATTCTTCA GATCGATAACGATGCGTACAATTACGGCCCTGGGTGGGGCCAAGGGGTCATGATGAGGACGGTTAGGAGGTTGAGCTGCGGTAATGGAAAGCCGAGATTC GATGTGGGTTATAGCGGAGACCAATGGGGTGGGGATAGGTTTTGGGGACCGATTACGAGTTTCAGCCAGAGTTCTGATCAAGCTAGATCTACTGAAGGTG GAATCAAGCAGGCTTCAAATGCACCAAATTTCTACCCGGAAGCTCTGTACCAGACCGCCATTGTTGGTACCGACGCTCAACCGGACTTGGAATACACAAT AGATGTCGAACCTAGCAGGAACTACTCGATTTGGCTGCATTTCGCCGAGATCGATGCTGCAGTGACGAACGTGGGGGAGAGGGTGTTTGACATCCTTGTT AATGGTGATGTCGTGTTCAAAGAAGTAGACGTTATGAAAATGACCGGAGCGCATCACACTGCGGTTGTTCTTAACACGACTGTTCCGATCGATGGGAGGT CGTTAACGATTACTCTAAGTCCGAAACAAGGGAATCATGCTATAATCAACGCCATTGAGATCTTTGAAGTTTTTAGAGCTGAATCTAAAACTCTTCCCCA AGAAGTGGCGGCTCTACAAAAACTCAAGACCGCATTGGGACTTCCTCTTCGATTCGGGTGGAACGGCGATCCATGCGTTCCTCAACAACATCCATGGAGT GGAGCCAATTGCCAATTCGACAGCACTAGTTTCAGATGGTTCATTGATGGGCTTGATCTTGACAATCAAGGTTTGAAAGGTTTCCTGCCAGATGACATAT TCAAACTTCAATACCTACAGAGCATAAACCTGAGTGGTAATGCTATTCATGGCTCTATCCCGTCTCCGATAGGGAATATAAGCAGTTTGGAAGTATTAGA CTTCTCCTATAACTTATTCAACGGGTCGATTCCTGAAAGCCTTGGGCAGTTGTCGAATTTGCGTAGACTGAATCTCAATGGCAACCATCTATCTGGCAGA GTCCCAGCTGCACTAGGAGGAAGGCTCTTAAGTGGAGCTAGCTTTAACTTTACTGATAACTCCGGCCTTTGCGGTGCACCCGGACTGCCAACATGCGGAC CACACCTCACCGCTGGTGCGAAAACCGGCATTGCTTTTGGGGCATCCTTCGGATTTCTCCTCATCGTAGTCTGCGTAACGTGCTGGTGTAAAAGGCGGCA GAACATTCTCAGAGCAAAGCAGATTGCTGCAAGAGGAGCTCCATATGCAAAGAAGAGAACCCATCTGTCGCATGACATCCAATTATCAAGGCCACATTAC AACAACACAAGCCACCATGCCAGAACAGCTGCTGAAAACGGACCTAGCTTGCTATCCTGA
AA sequence Show only first row Show all	>Lus10015417 pacid=23160922 polypeptide=Lus10015417 locus=Lus10015417.g ID=Lus10015417.BGIv1.0 annot-version=v1.0 MAPISKSKVALDVAADRETGESLSFAGFISVQDQEPKKSYDPRKMNKLDEQEFEFRCTVPAPVGKSNRRTRNHERRKRSAAAGSGRRSFFRSFFWPCKEC RVKNSVVEPGVQGPVTPWIIRISCGSRVNVNTEPTNTRWYKDFAYTGGIPSNRTTPPSFLTPPLKTLRYFPLSAGPNNCYNIHRVPKGHYTVRVFFGLID HPDFNDEALFDVSVQGTQVYSLQSGWSGQDDQTFVEAQVFLLDGASSICFHSTGHGDPAIVSIEILQIDNDAYNYGPGWGQGVMMRTVRRLSCGNGKPRF DVGYSGDQWGGDRFWGPITSFSQSSDQARSTEGGIKQASNAPNFYPEALYQTAIVGTDAQPDLEYTIDVEPSRNYSIWLHFAEIDAAVTNVGERVFDILV NGDVVFKEVDVMKMTGAHHTAVVLNTTVPIDGRSLTITLSPKQGNHAIINAIEIFEVFRAESKTLPQEVAALQKLKTALGLPLRFGWNGDPCVPQQHPWS GANCQFDSTSFRWFIDGLDLDNQGLKGFLPDDIFKLQYLQSINLSGNAIHGSIPSPIGNISSLEVLDFSYNLFNGSIPESLGQLSNLRRLNLNGNHLSGR VPAALGGRLLSGASFNFTDNSGLCGAPGLPTCGPHLTAGAKTGIAFGASFGFLLIVVCVTCWCKRRQNILRAKQIAARGAPYAKKRTHLSHDIQLSRPHY NNTSHHARTAAENGPSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015417 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	8.4	0.9408
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	12.2	0.9351
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	12.8	0.9207
AT1G19130			unknown protein		Lus10027661 [exp]	13.7	0.9272
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	17.5	0.9313
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	18.2	0.9343
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	19.4	0.9299
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	20.5	0.9130
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	21.7	0.9308
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	25.6	0.8962

Compare expression of checked genes

Lus10015417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.