Plant FIBer expression Database

Lus10015419 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28320 461 / 4e-154 DEG15 protease-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G056100
[exp]
583 / 0 AT1G28320 713 / 0.0 protease-related (.1)
Potri.004G046900
[exp]
575 / 0 AT1G28320 737 / 0.0 protease-related (.1)
PFAM info
Representative CDS sequence
>Lus10015419 pacid=23160898 polypeptide=Lus10015419 locus=Lus10015419.g ID=Lus10015419.BGIv1.0 annot-version=v1.0
ATGAATCTACCGGAAACTGTCGATTTGGTGCGCAGTTTGGCCGCCATGGTCAGAGTCCGTGGCCTTGATCCTAAGGGTCTGAAGATGCGGAATCATGCGT
TTTACAAGAGCAATCTTCGTTTCACGGCTGTGTGTAGTACTGGTAGAACTACACTGTCGGCTTCTGGCGTGCTGTTGCCGGACGCCTTCTACGATGCTAA
CGTCGCAAGCCGGATAATGTACGACGGCGGCGATGGTCAGAGACTAGCTCTACTTCTCACCGTCGCGTCTGTAGTCGAGCCTTTTGTATCTGTGCAGCAT
CGGCAGAGTAGCTATCAGGGCGTACCTGAGCTGATTCCTGGTGCTCATATCGAGGTTATGTTAGAGGATAAGTTGGAGTTTGAGATGAGTACCGTTAAGG
TTGTAGATGGAGATTGCCCTTGGATCACTGCAAAGCTTTTGAGATTGGTTGATGTTCCAGCTTCTTCCTCCGCGCTCGAATCACTACTTAAAGCTTCTTC
AGGCTCGCCAAACTATGGTTGGGAGATGGGTTGGTCCCTTGCCTCTCGTGAAGATAATACTTCTCAGCATTATGGGGAATCTTACAACTCATCGGAGTCT
GATAGTCATTTAGAAATCAAGGAATCCAGGAATCCGTCTCATATGGGCTGGTCAGCCACTAGGATTGCTGTTCTTGGAGTCCCTCTGAATCTTAAGAATC
TACCATCTGTCCCTAATTCACCTTCGACTAAAAGGGGAGACTTCCTTTTGGCTGTTGGTTCACCCTTTGGCATCGTTTCACCAGTGCATTTCCTTAACAG
CATATCAGCGGGATCCATCTCCAACCACTACCCACATTTTTCACATGGCACATCATTGCTAATGGCCGATATCCGCTGTCTTCCCGGCATGGAAGGCTGT
CCTGTGTTTGATAAAGACGGACGCTTCATTGGAGTCTTGATCAGACCCTTGAGGCAGAAGAGTACCGGCGCTGAGATTCAGCTGGTGATCCCATGGGAAG
CCATTACAAGCGCTTGCATTGACTTGCTGCTCAAGGGCCCTGAAATTGCAGATAAAGAGGTCCCTATTAATTCGGGAAAATTGAATGCTGTAGGAGTAGT
GCCTTTCAGTAACAAGTATGAGCCCTTTCATTCCGAGCCAGTGGAGAAGGCGATGTCTTCAGTTTGTCTCATCACCGTTGATGAAGGTACATGGGCATCT
GGAGTGTTGCTCAATGAGCAAGGCTTGGTACTCACAAACGCGCACTTGTTAGAGCCATGGAGATTTGGAAAGCCGAATGTAACCAGATCAGATATAGTTC
CACTTGGGCAGGAATTTCTATGTCCTCAGTCTACTAGAGAAGAGCTCTTCGAGAAGAATGCGAACCGATTTCTTAGCTCACAAGTCGCTGTGGATTCTTC
TAACACGAATTGGACGAAAGGATATGCATCGAGTTTGGCTTACAAGGGTCATCAAGGCATTCGTATCCGCTTAAACCATGTTGACCCTTGGATTTGGTGT
GATGCTAAAGTAGTATATATCTCTACGGGGCCTTTGGATGTTGCCCTATTGCAGCTTGATCTTGTTCCAGGCCGTCTTTGCCCAATCAGTGTGGATCTTT
CTTGCCCATCTTTGGGATCAAAGGCATATGTTATTGGGCATGCTTTATTTGGACCAAGATGTGATATGCGGGACACTACAATCCTGAAGCAGCTCGATCA
ACCAAACGATGACCTTACTTCAGTGTGGTCATTGATGCCCCTACCGTCCACAAAGTCAAAGCCAAAACCAGAGCTGAGTATTCCCCTGCAGGAATCACTT
CAGAAGCCCGGGAAGGGCTCGAAATTTGCGAGGTTCATGGCTGAGAGGGACACTGTTTGGAGAAGGCCATCTTCAAATGAGGTTAGCAAGAGCAGCTCGA
ATGAGTTCGTCCGCAGCAAGCTATGA
AA sequence
>Lus10015419 pacid=23160898 polypeptide=Lus10015419 locus=Lus10015419.g ID=Lus10015419.BGIv1.0 annot-version=v1.0
MNLPETVDLVRSLAAMVRVRGLDPKGLKMRNHAFYKSNLRFTAVCSTGRTTLSASGVLLPDAFYDANVASRIMYDGGDGQRLALLLTVASVVEPFVSVQH
RQSSYQGVPELIPGAHIEVMLEDKLEFEMSTVKVVDGDCPWITAKLLRLVDVPASSSALESLLKASSGSPNYGWEMGWSLASREDNTSQHYGESYNSSES
DSHLEIKESRNPSHMGWSATRIAVLGVPLNLKNLPSVPNSPSTKRGDFLLAVGSPFGIVSPVHFLNSISAGSISNHYPHFSHGTSLLMADIRCLPGMEGC
PVFDKDGRFIGVLIRPLRQKSTGAEIQLVIPWEAITSACIDLLLKGPEIADKEVPINSGKLNAVGVVPFSNKYEPFHSEPVEKAMSSVCLITVDEGTWAS
GVLLNEQGLVLTNAHLLEPWRFGKPNVTRSDIVPLGQEFLCPQSTREELFEKNANRFLSSQVAVDSSNTNWTKGYASSLAYKGHQGIRIRLNHVDPWIWC
DAKVVYISTGPLDVALLQLDLVPGRLCPISVDLSCPSLGSKAYVIGHALFGPRCDMRDTTILKQLDQPNDDLTSVWSLMPLPSTKSKPKPELSIPLQESL
QKPGKGSKFARFMAERDTVWRRPSSNEVSKSSSNEFVRSKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G28320 DEG15 protease-related (.1) Lus10015419
[exp]
0 1
AT3G48060 BAH domain ;TFIIS helical bund... Lus10033410
[exp]
8.2 0.8456
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Lus10014796
[exp]
16.4 0.8248
AT4G10320 tRNA synthetase class I (I, L,... Lus10041706
[exp]
17.0 0.8353
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Lus10032830
[exp]
19.6 0.8455
AT3G11960 Cleavage and polyadenylation s... Lus10017295
[exp]
21.9 0.8291
AT5G42950 GYF domain-containing protein ... Lus10012078
[exp]
24.1 0.8264
AT5G01400 ESP4 ENHANCED SILENCING PHENOTYPE 4... Lus10005032
[exp]
28.1 0.8218
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Lus10001147
[exp]
31.9 0.8245
AT1G55750 BSD domain (BTF2-like transcri... Lus10007089
[exp]
41.0 0.7802
AT3G07160 CALS9, ATGSL10 glucan synthase-like 10 (.1) Lus10042959
[exp]
50.0 0.8067

Lus10015419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.