Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33820 390 / 3e-137 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G46800 158 / 2e-46 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT5G66380 90 / 2e-20 ATFOLT1 folate transporter 1 (.1) AT1G79900 87 / 8e-20 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G01340 66 / 4e-12 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT1G34065 64 / 1e-11 SAMC2 S-adenosylmethionine carrier 2 (.1) AT1G14140 64 / 1e-11 Mitochondrial substrate carrier family protein (.1) AT5G58970 64 / 2e-11 ATUCP2 uncoupling protein 2 (.1.2) AT1G25380 60 / 4e-10 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G26180 59 / 7e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013998 [exp] 236 / 1e-77 AT2G33820 215 / 3e-69 Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 145 / 2e-41 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 144 / 6e-41 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10037544 [exp] 96 / 1e-22 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 96 / 2e-22 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 74 / 3e-15 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10027817 [exp] 72 / 2e-14 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 69 / 7e-13 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 67 / 3e-12 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046801 [exp] 446 / 1e-159 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 441 / 1e-157 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 137 / 2e-38 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 135 / 1e-37 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 95 / 2e-22 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.003G053900 [exp] 92 / 4e-21 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 90 / 1e-20 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.016G119500 [exp] 71 / 1e-13 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 70 / 3e-13 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 68 / 1e-12 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10015420 pacid=23160928 polypeptide=Lus10015420 locus=Lus10015420.g ID=Lus10015420.BGIv1.0 annot-version=v1.0 ATGGAGCAGAACAATCCAGCTTACAAGGAGTACTTAGCTGGTTTGCTCGCCGGCGTCTCCACAGTTGCTATCGGCCATCCTTTCGACACCGTCAAGGTGA AGCTCCAGAAGCACAACACTGAAGCCCATGGTGTTAAGTACAGGAATGCGTTCGATTGTACAGCTAGGATATTACAGACTGAAGGAGTTAAAGGACTGTA TAGAGGAGCAACGTCGTCTTTTGTTGGAGTGGCAGTTGAAAGCTCGCTTCTTTTCGGCATCTATTCTCGGACTAAGCAGTCTCTGCAGAAAGGAGTGCAA ACTGATAAACCTCAGCCTCAAGTAATAATCCCCTCTGCAGCATTTGGTGGATCCATCATCAGTTTCGTACTATGTCCATCCGAGCTAGTCAAGGCAGGGA TGCAAGTTCAAGGTGCAGACTCGTTAGTTCCGCAGATCGAAAGATACAACAGCCCTCTAGATTGCGCCATTCGAACGATGAAACACGACGGGGCAAGTTT GACTACATTCATGAGAGAAGCTATTGGCAATGCTGCTTTCTTCAGCGCTTATGAGTATGTCCGTTACTACATGCATCGACACCTCAAAGGTCGTGAAAAC CGCAGCTATTTGATGGACATGGGGATCGGTATCGTTACTGGAGGACTCGGTGGCGTTATGTTTTGGTCGGTCGTGCTCCCACTTGATGTTGCGAAAACCA TTATCCAGACTTCGCCAGACAAGAATTCGACGAGAAATCCGTTCAGAGTCCTCAATTATATATACAAGAGCAATGGGGTGAAAGGATGCTATACCGGTCT GGGGCCGACGATTGTGAGAGCATTTCCAGCGAATGCAGCTGCGATCGTCACCTGGGAGCTAGCGATGAAGATGCTGGGGATCGAGCGCGATTAA
AA sequence Show only first row Show all	>Lus10015420 pacid=23160928 polypeptide=Lus10015420 locus=Lus10015420.g ID=Lus10015420.BGIv1.0 annot-version=v1.0 MEQNNPAYKEYLAGLLAGVSTVAIGHPFDTVKVKLQKHNTEAHGVKYRNAFDCTARILQTEGVKGLYRGATSSFVGVAVESSLLFGIYSRTKQSLQKGVQ TDKPQPQVIIPSAAFGGSIISFVLCPSELVKAGMQVQGADSLVPQIERYNSPLDCAIRTMKHDGASLTTFMREAIGNAAFFSAYEYVRYYMHRHLKGREN RSYLMDMGIGIVTGGLGGVMFWSVVLPLDVAKTIIQTSPDKNSTRNPFRVLNYIYKSNGVKGCYTGLGPTIVRAFPANAAAIVTWELAMKMLGIERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10015420 [exp]	0	1
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	4.2	0.8448
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	8.4	0.8400
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	8.9	0.7922
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10034796 [exp]	14.7	0.8283
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	17.9	0.8191
AT1G08220			unknown protein		Lus10005355 [exp]	19.2	0.8141
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	27.4	0.8007
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	29.5	0.6985
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	29.6	0.7704
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	31.8	0.7543

Compare expression of checked genes

Lus10015420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.